Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-EIF2.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20920 396 / 9e-141 EIF2 BETA, EMB1401, EIF2BETA embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3) AT3G07920 211 / 2e-69 Translation initiation factor IF2/IF5 (.1) AT5G01940 154 / 4e-46 eukaryotic translation initiation factor 2B family protein / eIF-2B family protein (.1) AT1G36730 57 / 4e-09 Translation initiation factor IF2/IF5 (.1) AT1G77840 50 / 6e-07 Translation initiation factor IF2/IF5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G131200 [exp] 484 / 1e-175 AT5G20920 399 / 7e-142 embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3) Potri.017G122200 [exp] 61 / 2e-10 AT1G77840 456 / 1e-158 Translation initiation factor IF2/IF5 (.1) Potri.004G093600 [exp] 58 / 2e-09 AT1G77840 514 / 0.0 Translation initiation factor IF2/IF5 (.1) Potri.004G112200 [exp] 57 / 3e-09 AT1G77840 493 / 2e-173 Translation initiation factor IF2/IF5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007559 [exp] 417 / 2e-148 AT5G20920 385 / 3e-136 embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3) Lus10012186 [exp] 404 / 2e-143 AT5G20920 373 / 3e-131 embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3) Lus10007557 [exp] 208 / 3e-67 AT5G20920 192 / 2e-61 embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3) Lus10002283 [exp] 60 / 4e-10 AT1G36730 505 / 6e-178 Translation initiation factor IF2/IF5 (.1) Lus10004057 [exp] 60 / 4e-10 AT1G36730 505 / 4e-178 Translation initiation factor IF2/IF5 (.1) Lus10010981 [exp] 54 / 8e-09 AT1G36730 282 / 3e-95 Translation initiation factor IF2/IF5 (.1) Lus10000448 [exp] 54 / 4e-08 AT1G36730 423 / 7e-147 Translation initiation factor IF2/IF5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF01873 [poplar] [flax] eIF-5_eIF-2B Domain found in IF2B/IF5
Representative CDS sequence Show only first row Show all	>Potri.013G158400.1 pacid=42812537 polypeptide=Potri.013G158400.1.p locus=Potri.013G158400 ID=Potri.013G158400.1.v4.1 annot-version=v4.1 ATGGCGGACGATAATACTGACCTCAAGGATGAGGTTGCAGAGCTTGCCCCTTTTGATCCTACCAAAAAGAAGAAGAAGAAGAAGGTGGTGATACAAGAGA ATGCCGATGAGTCTGTAGACTCCCTAGCTGAGAAGACTGAATCATTGTCAGTCTCTGATGGGCTCGAGAGTTCTTTTACTGGTTTGAAAAAGAAGAAGAA GAAACCTGTTGAAACCAGTTTGCTGGATGAGGAAACCGGGGATGCAGGAGAAGAAGATTTGGATGTTCATGCCGGGGAAGAAGAAAATGGGGAGGGTGCT GACCTGCAGCAGCAACGATTCCCTTGGGATGGGACTGACCGTGATTATGATTATGAGGAGCTTCTTGGCCGAGTTTTCAACATTCTTCGTGAAAATAATC CTGAGCTTGCTGGTGACAGGCGAAGAACTGTGATGAGGCCTCCACAAGTTCTTCGTGAGGGCACAAAGAAGACTGTTTTTGTGAACTTCATGGATCTGTG CAAGACAATGCATCGGCAGGCAGACCATGTCATGGCTTTCCTACTTGCTGAGTTGGGTACCAGTGGATCCCTCGATGGACAACAGAGGTTGGTCATTAAG GGTAGATTTGCTCCCAAGAATTTTGAAGGGATCCTTCGTCGATATATCAATGAGTATGTCATTTGCCTTGGTTGCAAGAGTCCTGACACCATTTTGTCTA AAGAGAATCGTCTCTTTTTTCTCAGATGCGAGAAGTGTGGTTCTGGAAGATCAGTTGCTCCAATTAAAGCTGGTTTTGTTGCTCGTGTTGGCCGTAGAAA TGCTGGGACATAA
AA sequence Show only first row Show all	>Potri.013G158400.1 pacid=42812537 polypeptide=Potri.013G158400.1.p locus=Potri.013G158400 ID=Potri.013G158400.1.v4.1 annot-version=v4.1 MADDNTDLKDEVAELAPFDPTKKKKKKKVVIQENADESVDSLAEKTESLSVSDGLESSFTGLKKKKKKPVETSLLDEETGDAGEEDLDVHAGEEENGEGA DLQQQRFPWDGTDRDYDYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQADHVMAFLLAELGTSGSLDGQQRLVIK GRFAPKNFEGILRRYINEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFVARVGRRNAGT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20920		EIF2 BETA, EMB1...	embryo defective 1401, eukaryo...		Potri.013G158400 [exp]	0	1	Pt-EIF2.3
AT4G26240			unknown protein		Potri.006G153800 [exp]	1.41	0.9063
AT5G64350		FKP12, ATFKBP12...	ARABIDOPSIS THALIANA FK506-BIN...		Potri.007G113100 [exp]	2.00	0.8848
AT3G23325			Splicing factor 3B subunit 5/R...		Potri.008G168000 [exp]	2.00	0.8521
AT4G14615			unknown protein		Potri.010G079100 [exp]	2.23	0.8504
AT1G52740		HTA9	histone H2A protein 9 (.1)		Potri.006G249400 [exp]	5.19	0.8567	HTA906
AT5G48870		SAD1	SUPERSENSITIVE TO ABA AND DROU...		Potri.001G277900 [exp]	7.34	0.8486	Pt-SAD1.2
AT5G57950			26S proteasome regulatory subu...		Potri.006G184600 [exp]	9.94	0.8351
AT1G02140		MAGO, HAP1, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.014G049700 [exp]	10.95	0.8238
AT1G73030		CHMP1A, VPS46.2	CHARGED MULTIVESICULAR BODY PR...		Potri.001G194400 [exp]	12.72	0.8068
AT4G30010			unknown protein		Potri.006G075600 [exp]	16.00	0.8459

Compare expression of checked genes

Potri.013G158400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.