Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RPT2.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30520 846 / 0 RPT2 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) AT5G67385 410 / 2e-136 Phototropic-responsive NPH3 family protein (.1) AT5G48800 376 / 4e-123 Phototropic-responsive NPH3 family protein (.1) AT2G47860 347 / 1e-111 SETH6 Phototropic-responsive NPH3 family protein (.1.2.3) AT3G08570 339 / 6e-109 Phototropic-responsive NPH3 family protein (.1) AT1G03010 333 / 2e-106 Phototropic-responsive NPH3 family protein (.1) AT3G08660 325 / 5e-104 Phototropic-responsive NPH3 family protein (.1) AT1G30440 316 / 1e-99 Phototropic-responsive NPH3 family protein (.1) AT5G13600 308 / 2e-97 Phototropic-responsive NPH3 family protein (.1) AT3G49970 303 / 4e-96 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G131600 [exp] 1021 / 0 AT2G30520 821 / 0.0 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) Potri.007G053200 [exp] 447 / 6e-151 AT5G67385 807 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.002G242300 [exp] 389 / 3e-128 AT5G48800 899 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G139900 [exp] 367 / 1e-119 AT3G08570 723 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.002G209700 [exp] 350 / 6e-113 AT1G03010 847 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.014G133500 [exp] 349 / 2e-112 AT1G03010 843 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.001G357100 [exp] 339 / 8e-109 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.017G048200 [exp] 337 / 2e-107 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.007G112600 [exp] 331 / 3e-105 AT5G64330 989 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029102 [exp] 890 / 0 AT2G30520 825 / 0.0 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) Lus10013057 [exp] 889 / 0 AT2G30520 825 / 0.0 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) Lus10025928 [exp] 379 / 3e-124 AT5G48800 925 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10011082 [exp] 343 / 9e-111 AT5G67385 476 / 2e-162 Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 318 / 1e-100 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10015871 [exp] 317 / 2e-100 AT5G03250 666 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 315 / 3e-99 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10009292 [exp] 314 / 4e-99 AT5G03250 670 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10013799 [exp] 314 / 6e-99 AT5G03250 672 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10041276 [exp] 311 / 6e-98 AT5G66560 750 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain CL0033 [poplar] [flax] PF03000 [poplar] [flax] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Potri.013G159000.5 pacid=42811045 polypeptide=Potri.013G159000.5.p locus=Potri.013G159000 ID=Potri.013G159000.5.v4.1 annot-version=v4.1 ATGGCTACTCCTGTCAGAAGCAACAGCAGGCTCTCTCTTGCCATGGAGAGAACTGACCAATGGGTCTTTTCTCAAGATATTCCTACAGATGTTGTGGTTG TAGTGTGTGAAGCCACCTTTTCTCTTCATAAGTTCATGCTAGTGGCAAAGAGCAACAACATAAGAAAACTAATACTGGAATCAAAAGAACCGGCCCTAAC AAAGATAGATCTGTCTGAGATACCTGGAGGGCCTGAGATCTTCGAAAAAGCAGCTAAATTCTGCTATGGTGTTAACTTTGAGATCACAGTTCACAACGTT GCAGCCCTTCGTTGTGCTGCTGAGTATCTTCAAATGACTGATGTGTATTGTGATTACAATCTTGCTGGTCGGACTGAAGATTTCCTTGCTCAAGTAGCCC TGTCTAGCCTTTCCGGCGCCATCGTTGTCTTAAAATCCTGTGAAGATCTCCTTCCCTTGGCTGAAGACCTCAAGATTGTCCAAAGATGTGTTGATGTCAT TAGCCTTAAGGCTTGTAATGAGGCAAACTTTCCAAGCAGAACACCACCAAATTGGTGGACCGAGGAGTTGTCGATTTTAGACATTGAATTCATAGGCAGA ATCCTGTCTGGAATGAAGAAACGCGGCTCGAAAGCACTAACTTTAGCAAGTGCTTTAATAACTTACACAGAAAGAAATCTTCGAGATCTTGTTCGAGATC AGTCTGGCAAGTGCACCAAGTCCTCCGATTCTGATGATCCCAATCTGTTTGCCCGTGAACGCGAGCTTCTGCAATCAATAGTCTCTCTCTTGCCCTCAGA GAAAGCTTCCTTCCCTATCAATTTCCTCTGCTGCCTTCTCCGTACTGCTATCTTCGTCAACGCCTCAAATTCTTGCAAGAATGAGCTCGAGAAGCGAATC TCGGTGATATTAGAGCATGTCACAGTTGATGATCTACTAGTCATGTCTTTCACTTATGATGGTGAGAGGCTTTTCGATCTGGATAGCGTGAGGAAGATCA TATCAGGATTCGTGGAGAAGGAGAAGAACATGGCTGTCTTTGGTGGTGCTGATTTTAAGGGATCAAATTCTGCAGCTATGCATAGAGTTGCCAAAACTGT AGACTCATATCTTGGTGAGATTGCATCCTATCCGGATCTCACCATTTCTAAATTCAATGGGATTGCTATTCTTGTGCCAAAAGGAGCCAGAAAGGTCGAT GATGATCTATATCGTGCCATCGACATCTTTCTAAAGGCTCATCCGAATCTTGATGAGATAGAACGGGAGAAGGTTTGCAGTGTTATGGACCCATTGAAAC TGTCCTATGAAGCTCGACTCCATGCTTCTCAAAACAAAAGATTACCAGTACAGATTGTTTTGCATGCACTTTACTATGATCAGCTTAAACTAAGGAGTGG TGTGAATGACCAGCCTGATGCTGTTGCAACAAGGAGTCAATTGCAGTCTGATGTTTCACTTGTCAGAGAGAATGAGGCCTTGCGGTCAGAGCTTATGAAG ATGAAGCTTTACATCTCAGACATGCAGAAGAATCAAGGGAGTTCAACTAAGGGTATTGCAGCTACAGCTGCTCCGACGACTACTGGATCTCGAAAACACT CCTTCTTCTCATCCATGTCGAAAACATTAGGGAAGTTGAATCCTTTCAAGCATGGATCTAAAGATACTTTTCATATTAATGATAACATCGGTGTGGATAT TACCAAGCCTAGGAGGAGAAGGTTCTCCATATCTTAG
AA sequence Show only first row Show all	>Potri.013G159000.5 pacid=42811045 polypeptide=Potri.013G159000.5.p locus=Potri.013G159000 ID=Potri.013G159000.5.v4.1 annot-version=v4.1 MATPVRSNSRLSLAMERTDQWVFSQDIPTDVVVVVCEATFSLHKFMLVAKSNNIRKLILESKEPALTKIDLSEIPGGPEIFEKAAKFCYGVNFEITVHNV AALRCAAEYLQMTDVYCDYNLAGRTEDFLAQVALSSLSGAIVVLKSCEDLLPLAEDLKIVQRCVDVISLKACNEANFPSRTPPNWWTEELSILDIEFIGR ILSGMKKRGSKALTLASALITYTERNLRDLVRDQSGKCTKSSDSDDPNLFARERELLQSIVSLLPSEKASFPINFLCCLLRTAIFVNASNSCKNELEKRI SVILEHVTVDDLLVMSFTYDGERLFDLDSVRKIISGFVEKEKNMAVFGGADFKGSNSAAMHRVAKTVDSYLGEIASYPDLTISKFNGIAILVPKGARKVD DDLYRAIDIFLKAHPNLDEIEREKVCSVMDPLKLSYEARLHASQNKRLPVQIVLHALYYDQLKLRSGVNDQPDAVATRSQLQSDVSLVRENEALRSELMK MKLYISDMQKNQGSSTKGIAATAAPTTTGSRKHSFFSSMSKTLGKLNPFKHGSKDTFHINDNIGVDITKPRRRRFSIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30520		RPT2	ROOT PHOTOTROPISM 2, Phototrop...		Potri.013G159000 [exp]	0	1	Pt-RPT2.4
AT1G11200			Protein of unknown function (D...		Potri.011G044200 [exp]	1.41	0.8890
					Potri.016G115650 [exp]	6.00	0.8085
AT5G49630		AAP6	amino acid permease 6 (.1)		Potri.002G112100 [exp]	7.74	0.7706	Pt-AAP1.2
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.001G014401 [exp]	10.48	0.8273
AT1G65780			P-loop containing nucleoside t...		Potri.017G140300 [exp]	10.72	0.8020
AT1G07650			Leucine-rich repeat transmembr...		Potri.011G073316 [exp]	17.74	0.8192
AT3G24150			unknown protein		Potri.006G067100 [exp]	24.00	0.7515
AT1G69600	ZF_HD	ATHB29, ZFHD1, ...	ZINC FINGER HOMEODOMAIN 11, AR...		Potri.015G032700 [exp]	33.27	0.7824
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Potri.015G100300 [exp]	34.64	0.7237
AT1G07650			Leucine-rich repeat transmembr...		Potri.011G072841 [exp]	37.81	0.7604

Compare expression of checked genes

Potri.013G159000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.