Plant FIBer expression Database

Potri.013G159301 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G14320 223 / 8e-74 RPL10A, RPL10, SAC52 SUPPRESSOR OF ACAULIS 52, ribosomal protein L10 A, ribosomal protein L10, Ribosomal protein L16p/L10e family protein (.1.2)
AT1G26910 222 / 1e-73 RPL10B ribosomal protein L10 B, Ribosomal protein L16p/L10e family protein (.1)
AT1G66580 219 / 2e-72 RPL10C, SAG24 ribosomal protein L10 C, senescence associated gene 24 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G131900
[exp]
236 / 5e-79 AT1G26910 410 / 6e-148 ribosomal protein L10 B, Ribosomal protein L16p/L10e family protein (.1)
Potri.013G159600
[exp]
236 / 6e-79 AT1G26910 411 / 3e-148 ribosomal protein L10 B, Ribosomal protein L16p/L10e family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012113
[exp]
135 / 1e-40 AT1G26910 209 / 3e-70 ribosomal protein L10 B, Ribosomal protein L16p/L10e family protein (.1)
Lus10010429
[exp]
135 / 1e-40 AT1G26910 209 / 3e-70 ribosomal protein L10 B, Ribosomal protein L16p/L10e family protein (.1)
Lus10031568
[exp]
135 / 1e-40 AT1G26910 209 / 5e-70 ribosomal protein L10 B, Ribosomal protein L16p/L10e family protein (.1)
Lus10015106
[exp]
135 / 1e-40 AT1G26910 209 / 5e-70 ribosomal protein L10 B, Ribosomal protein L16p/L10e family protein (.1)
Lus10035401
[exp]
135 / 1e-40 AT1G26910 206 / 5e-69 ribosomal protein L10 B, Ribosomal protein L16p/L10e family protein (.1)
Lus10031002
[exp]
135 / 1e-40 AT1G26910 206 / 5e-69 ribosomal protein L10 B, Ribosomal protein L16p/L10e family protein (.1)
Lus10034092
[exp]
133 / 6e-40 AT1G26910 216 / 7e-73 ribosomal protein L10 B, Ribosomal protein L16p/L10e family protein (.1)
Lus10003055
[exp]
127 / 5e-38 AT1G26910 135 / 2e-41 ribosomal protein L10 B, Ribosomal protein L16p/L10e family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e
Representative CDS sequence
>Potri.013G159301.1 pacid=42812035 polypeptide=Potri.013G159301.1.p locus=Potri.013G159301 ID=Potri.013G159301.1.v4.1 annot-version=v4.1
ATGAAGAGGAAGGGAGTTGATGAGTTCCCATTCTGGGCGCACTTGGTGTCCTGGGAGGAGAATGTCTCCAGTGAGGCTCTTGAGGCAGCACCTATTGCTT
GCAACAATGCTGGAAAGGATGCTTTCCATTTGAGAGTCAGGGTTCATTCATTCCATGTCCTGCGTATCAACAAGATGCTTTCATGTGGTGGAGCTGATTC
GCTCCAAACTGGCATGAGAGGTGCTTTCGGTAAACCACAGGGAACTTGTGCTAGAGTTGCAATTGGACAGGTTCTTCTGTCAGACGTTCGTTGCAAGGAC
AGCAACAGTCACCATGCTCAGGAGGCTCTTCGCCGTGCAAAATTCAAGTTCCCTGGTCGCCAAAAGATCATTGTCAGCAGGAAGTGGCATGCAATTTCTT
TCATTTGTTTTATTAACCGTGATATCTCACGGTTTTCTATTATTTTTTATGTTAGCATCATTGTTATGCATGAGGTAGTGTGCGTTTTCTTTGTTCTCAG
AGGCACACCTGATGCCTTGATTTCTTATTTCTGTGCTGCTTTACCATACTGGAAAAATGAAAGCCTGCACCTTATGGCAAGCCATTTCCCCACCTTCTTT
TGGAAGTTTTTTACTTTCTGTTTAGTTGGTGAGTATGCACTTACAATTACTACCTAA
AA sequence
>Potri.013G159301.1 pacid=42812035 polypeptide=Potri.013G159301.1.p locus=Potri.013G159301 ID=Potri.013G159301.1.v4.1 annot-version=v4.1
MKRKGVDEFPFWAHLVSWEENVSSEALEAAPIACNNAGKDAFHLRVRVHSFHVLRINKMLSCGGADSLQTGMRGAFGKPQGTCARVAIGQVLLSDVRCKD
SNSHHAQEALRRAKFKFPGRQKIIVSRKWHAISFICFINRDISRFSIIFYVSIIVMHEVVCVFFVLRGTPDALISYFCAALPYWKNESLHLMASHFPTFF
WKFFTFCLVGEYALTITT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G14320 RPL10A, RPL10, ... SUPPRESSOR OF ACAULIS 52, ribo... Potri.013G159301
[exp]
0 1
AT3G04400 EMB2171 embryo defective 2171, Ribosom... Potri.010G167700
[exp]
2.64 0.9514
AT5G39850 Ribosomal protein S4 (.1) Potri.006G209900
[exp]
3.46 0.9329
Potri.011G073216
[exp]
3.46 0.9396
AT5G35530 Ribosomal protein S3 family pr... Potri.015G071700
[exp]
4.00 0.9364
AT3G04400 EMB2171 embryo defective 2171, Ribosom... Potri.011G127250
[exp]
4.24 0.9425
AT1G62440 LRX2 leucine-rich repeat/extensin 2... Potri.018G151000
[exp]
4.58 0.9322
AT2G36530 ENO2, LOS2 LOW EXPRESSION OF OSMOTICALLY ... Potri.012G129300
[exp]
6.08 0.8877
AT5G66680 DGL1 DEFECTIVE GLYCOSYLATION, dolic... Potri.004G157900
[exp]
8.36 0.9085
AT3G21200 PGR7 proton gradient regulation 7 (... Potri.008G008801
[exp]
10.24 0.8892
Potri.001G108450
[exp]
12.84 0.8906

Potri.013G159301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.