Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06840 1102 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G01950 869 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G37450 723 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G53590 631 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G79620 400 / 6e-124 Leucine-rich repeat protein kinase family protein (.1) AT5G49770 364 / 1e-110 Leucine-rich repeat protein kinase family protein (.1) AT5G49760 361 / 2e-109 Leucine-rich repeat protein kinase family protein (.1) AT5G49780 307 / 2e-90 Leucine-rich repeat protein kinase family protein (.1) AT3G24550 237 / 7e-67 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT5G61350 235 / 4e-65 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G159200 [exp] 1630 / 0 AT1G06840 1040 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G131800 [exp] 1363 / 0 AT1G06840 1092 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G111100 [exp] 979 / 0 AT5G01950 1052 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G140300 [exp] 975 / 0 AT5G01950 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G140200 [exp] 920 / 0 AT5G01950 1018 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G140101 [exp] 914 / 0 AT1G06840 1001 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G144100 [exp] 411 / 4e-128 AT1G79620 1380 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G232400 [exp] 403 / 3e-125 AT5G49760 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G114400 [exp] 401 / 3e-124 AT1G79620 1295 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019114 [exp] 1229 / 0 AT1G06840 1288 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034445 [exp] 1223 / 0 AT1G06840 1274 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035605 [exp] 915 / 0 AT5G01950 1126 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10003244 [exp] 870 / 0 AT5G01950 1039 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004061 [exp] 568 / 0 AT5G01950 766 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10002278 [exp] 563 / 0 AT5G37450 722 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10012159 [exp] 378 / 5e-115 AT5G49760 1058 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10007587 [exp] 300 / 3e-87 AT5G49760 956 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021003 [exp] 268 / 4e-80 AT1G79620 549 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023848 [exp] 253 / 3e-75 AT1G79620 431 / 5e-143 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.013G159500.4 pacid=42812322 polypeptide=Potri.013G159500.4.p locus=Potri.013G159500 ID=Potri.013G159500.4.v4.1 annot-version=v4.1 ATGATTCGGAATTCTGGTGCTTTTTCCCTTCTTGGCATGTCTAAATCAAGAGCTTGCACATTTGGAGCTGTTCTGCTTATCTGGCTCAGTTGCTCTTCAT TACTTGTAGCAGCACAAGATGGAATTACTGACCCTGTAGAAGTGAAGGCATTGCAAGACATCAAGAACAGTTTAATTGACATCAATAAGAATTTGAGTAA TTGGAGACGTGGGGATCCATGCACATCAAACTGGACAGGGGTTTGGTGCTTCAATACAGCAAAAGAGGATGGCTATCTACATGTAAAAGAATTACAACTG TTAAATATGAATTTATCAGGAACTTTATCACCATCGCTTGGCCTCTTGTCTTACATGGAAATTTTGGATTTTATGTGGAACAGCATTACTGGAAGCATAC CGCCGGAGATAGGCAATATTAAATCTTTGGAGCTCTTGCTCCTGAATGGAAATCAATTAACCGGTCCCTTACCGGAAGAGCTTGGCTATCTTCCAAAATT GGACAGAATACAGATAGACCAGAATCATATATCAGGACCAATACCTAAATCATTTGCGTACTTGAACAGCACAAAGCACTTTCACATGAACAACAATTCA ATTAGTGGGCAAATCCCGGCTGAGCTTTCCAGATTACCGAATCTTGTTCACTTCCTTCTGGATAACAACAATCTATCAGGAACTCTTCCGCCAGATTTAT ACAAATTGCCGAAATTACTTATACTCCAGCTTGACAATAACCACTTTGATGGGAGCACAATCCCACCTTCTTATGGAAACATGACTCAATTGTTGAAATT GAGTCTCAGGAACTGTAGCTTGCGAGGTCCGATGCCTGACCTGAGCAGGATACCAAATCTTGGCTATCTAGACCTCAGTTTCAACCAGCTAGCTGGACCC ATACCTCCAAAAAAGCTTTCTGAAAATATTACAACCATCGATTTATCCAACAACACTCTTAACGGAACTATTCCTGCCTACTTTTCAGACCTTCCTCGAC TTCAGCTACTGTCAACTGCAAACAATTCATTGAGTGGCTCTGTTCCCTCCACCATCTGGCAAACTAGGACCAACAGGAATGAAGGACTTCACTTGCATTT TGAAAACAATAGGCTTTCAAATATTTCTGGCAGCACCAGTCTCCCTCAGAATGTCACGCTATGGCTTCAAGGAAATCCGGCATGCTTAAATTTCAACATA GTCCGATTTTGTGGATCGCAGAATGGTGATGTGAACAATCAGAGCTCAACAGAATCTAATGTTACCTGTCCCGCTCAATCATGCCCACCCCCTAACGAAT ATTTCCGAACATCTCCTATATCTTGTTTCTGCGCTGCCCCTTTGATCATCGGATATCGACTGAAAAGTCCTGGTTTCACAAATTTTATCCCCTACAGAGT TGCATTCGAGGACCATTTGACCTCTGGTCTCGAATTGCATCTTTATCAGCTAGACCTTTCTTCAACTATATGGGAAGAAGGACCTCGATTAAAAATGCAG TTGAAGCTTTTTCCTGTCTATGTTAACGAAAACAGTTCTCATACCTTCAATGACAGTGAGGTTCGACGCATCATTACCTTGTTCAGGGGGTGGAACATTC CTGGCAGTCGATTATTCGGGCCTTATGAACTTCTTTACATCAATCTGTTGGATCCTTATACAAATGTGCTTTTTGTCACCCCTCAAAAATCTAAAATAAG CACGGGTGCTCTGGTTGGCGTAGTATTGGGAGCCATCGCAGGAGCAGTTACATTATCAGCAGTTGTTTCTCTTCTTATCGTGAGAAAACGTTCGAGGGAC TACCGAGCAATATCAAAAAGACGTCGTGTATCAAAAGCCTCCCTGAAAATTGAAGGTGTGAAGTACTTTTCTTATGCTGAAATGGCCTTGGCTACCAACA ATTTTAATCGGTCCAGCCAAGTTGGTCAAGGGGGTTATGGAAAAGTTTATAAAGGATTTCTCGCTGATGGCAGAACTGTGGCTATAAAACGGGCTGAAGA GGCATCTTTTCAGGGTGAGAGAGAGTTCTTAACAGAAATAGAGTTGCTGTCAAGGGTACATCATCGGAACCTGGTATCTTTGATTGGATTTTGTGATGAA GGTGGCGAACAGATGTTGGTTTACGAGTTCATGTCGAATGGCACTCTCAGAGATCATCTCTCTGCGAAGGCAAAAGAACCTTTGAGTTTTGCGACAAGAT TGGGAATTGCCCTGGATTCAGCTAAGGGTATCCTCTACTTACATACAGAAGCTGATCCTCCAATATTCCATCGAGATGTCAAGGCAAGCAACATATTATT GGACTCCAGGTATAATGCCAAAGTTGCTGATTTTGGACTCTCAAAACTTGCCCCAGTACCAGACATTGAAGGGGATGTGCCGGGTCATATATCCACGGTC GTGAAGGGTACTCCAGGTTACCTTGATCCAGAGTACTTTCTGACTGGTAAATTGACAGACAAGAGTGATGTTTATAGCCTTGGTGTCGTATTTCTAGAGC TGTTGACTGGGATGCAACCAATCTCGCACGGCAAAAACATTGTTAAAGAGGTTAATATCGCATATCAAACTGGTATAATCTTCTCTGTCGTTGATGGACG AATGAGGTCTTATCCTTCCGACTGCGTCGACAAGTTCTCAACTCTGGCCATGAAATGTTGCAACTATGAGACGGATGAAAGACCATCAATGATTGATGTG GTCCGGGAACTTGAAAATATGTGGCATATGATGCCAGAATCGGATACTAAAACAACGGATACAATGAGCATTGATATCGGAATGGAAATGACCTCACCCT CTTCATACTCTCTATTGAAGAACCCTTGTGTGTCGTCAGAAGTCTCTAGCAGTAACCTTGTTGGTAGAGTTGCTCCAACCATCACTCCCAGATAA
AA sequence Show only first row Show all	>Potri.013G159500.4 pacid=42812322 polypeptide=Potri.013G159500.4.p locus=Potri.013G159500 ID=Potri.013G159500.4.v4.1 annot-version=v4.1 MIRNSGAFSLLGMSKSRACTFGAVLLIWLSCSSLLVAAQDGITDPVEVKALQDIKNSLIDINKNLSNWRRGDPCTSNWTGVWCFNTAKEDGYLHVKELQL LNMNLSGTLSPSLGLLSYMEILDFMWNSITGSIPPEIGNIKSLELLLLNGNQLTGPLPEELGYLPKLDRIQIDQNHISGPIPKSFAYLNSTKHFHMNNNS ISGQIPAELSRLPNLVHFLLDNNNLSGTLPPDLYKLPKLLILQLDNNHFDGSTIPPSYGNMTQLLKLSLRNCSLRGPMPDLSRIPNLGYLDLSFNQLAGP IPPKKLSENITTIDLSNNTLNGTIPAYFSDLPRLQLLSTANNSLSGSVPSTIWQTRTNRNEGLHLHFENNRLSNISGSTSLPQNVTLWLQGNPACLNFNI VRFCGSQNGDVNNQSSTESNVTCPAQSCPPPNEYFRTSPISCFCAAPLIIGYRLKSPGFTNFIPYRVAFEDHLTSGLELHLYQLDLSSTIWEEGPRLKMQ LKLFPVYVNENSSHTFNDSEVRRIITLFRGWNIPGSRLFGPYELLYINLLDPYTNVLFVTPQKSKISTGALVGVVLGAIAGAVTLSAVVSLLIVRKRSRD YRAISKRRRVSKASLKIEGVKYFSYAEMALATNNFNRSSQVGQGGYGKVYKGFLADGRTVAIKRAEEASFQGEREFLTEIELLSRVHHRNLVSLIGFCDE GGEQMLVYEFMSNGTLRDHLSAKAKEPLSFATRLGIALDSAKGILYLHTEADPPIFHRDVKASNILLDSRYNAKVADFGLSKLAPVPDIEGDVPGHISTV VKGTPGYLDPEYFLTGKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVKEVNIAYQTGIIFSVVDGRMRSYPSDCVDKFSTLAMKCCNYETDERPSMIDV VRELENMWHMMPESDTKTTDTMSIDIGMEMTSPSSYSLLKNPCVSSEVSSSNLVGRVAPTITPR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06840			Leucine-rich repeat protein ki...		Potri.013G159500 [exp]	0	1
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Potri.005G027200 [exp]	2.44	0.9061
AT3G02100			UDP-Glycosyltransferase superf...		Potri.013G022800 [exp]	3.46	0.8924
AT5G04140		GLS1, GLUS, GLU...	FERREDOXIN-DEPENDENT GLUTAMATE...		Potri.006G038400 [exp]	3.74	0.9104	Pt-GLU1.2
AT5G65500			U-box domain-containing protei...		Potri.007G011500 [exp]	4.58	0.9168
AT2G46870	B3	NGA1	NGATHA1, AP2/B3-like transcrip...		Potri.002G181600 [exp]	9.53	0.8918
AT1G07670		ATECA4	endomembrane-type CA-ATPase 4 ...		Potri.005G147900 [exp]	11.22	0.8755
AT3G56040		UGP3	UDP-glucose pyrophosphorylase ...		Potri.010G185800 [exp]	12.64	0.9018
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Potri.002G068400 [exp]	14.66	0.9009
AT3G22104			Phototropic-responsive NPH3 fa...		Potri.017G041600 [exp]	16.43	0.8871
AT3G06880			Transducin/WD40 repeat-like su...		Potri.012G118600 [exp]	16.61	0.8696

Compare expression of checked genes

Potri.013G159500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.