Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RPL10.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26910 411 / 3e-148 RPL10B ribosomal protein L10 B, Ribosomal protein L16p/L10e family protein (.1) AT1G14320 407 / 2e-146 RPL10A, RPL10, SAC52 SUPPRESSOR OF ACAULIS 52, ribosomal protein L10 A, ribosomal protein L10, Ribosomal protein L16p/L10e family protein (.1.2) AT1G66580 403 / 6e-145 RPL10C, SAG24 ribosomal protein L10 C, senescence associated gene 24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G131900 [exp] 449 / 5e-163 AT1G26910 410 / 6e-148 ribosomal protein L10 B, Ribosomal protein L16p/L10e family protein (.1) Potri.013G159301 [exp] 234 / 2e-78 AT1G14320 222 / 2e-73 SUPPRESSOR OF ACAULIS 52, ribosomal protein L10 A, ribosomal protein L10, Ribosomal protein L16p/L10e family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035401 [exp] 226 / 3e-76 AT1G26910 206 / 5e-69 ribosomal protein L10 B, Ribosomal protein L16p/L10e family protein (.1) Lus10031002 [exp] 226 / 3e-76 AT1G26910 206 / 5e-69 ribosomal protein L10 B, Ribosomal protein L16p/L10e family protein (.1) Lus10031568 [exp] 224 / 1e-75 AT1G26910 209 / 5e-70 ribosomal protein L10 B, Ribosomal protein L16p/L10e family protein (.1) Lus10015106 [exp] 224 / 1e-75 AT1G26910 209 / 5e-70 ribosomal protein L10 B, Ribosomal protein L16p/L10e family protein (.1) Lus10034092 [exp] 223 / 2e-75 AT1G26910 216 / 7e-73 ribosomal protein L10 B, Ribosomal protein L16p/L10e family protein (.1) Lus10012113 [exp] 223 / 3e-75 AT1G26910 209 / 3e-70 ribosomal protein L10 B, Ribosomal protein L16p/L10e family protein (.1) Lus10010429 [exp] 223 / 3e-75 AT1G26910 209 / 3e-70 ribosomal protein L10 B, Ribosomal protein L16p/L10e family protein (.1) Lus10003055 [exp] 143 / 2e-44 AT1G26910 135 / 2e-41 ribosomal protein L10 B, Ribosomal protein L16p/L10e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00252 [poplar] [flax] Ribosomal_L16 Ribosomal protein L16p/L10e
Representative CDS sequence Show only first row Show all	>Potri.013G159600.2 pacid=42811033 polypeptide=Potri.013G159600.2.p locus=Potri.013G159600 ID=Potri.013G159600.2.v4.1 annot-version=v4.1 ATGGGTAGAAGACCTGCAAGATGTTACCGTCAGATCAAAAATAAGCCATACCCAAAATCACGTTACTGCCGTGGTGTGCCTGACTCTAAGATCAGGATTT ATGATGTTGGCATGAAGAGGAAGGGAGTTGATGAGTTCCCATTCTGTGTGCACTTGGTGTCCTGGGAGAAGGAGAATGTCTCCAGTGAGGCTCTTGAGGC AGCACGTATTGCTTGCAACAAATACATGGCCAAGTTTGCTGGAAAGGATGCTTTCCATTTGAGAGTCAGGGTTCATCCATTCCATGTGTTGCGAATCAAC AAGATGCTTTCATGTGCTGGAGCTGATAGGCTCCAAACTGGCATGAGGGGTGCTTTCGGTAAACCACAGGGAACTTGTGCTAGAGTTGCAATTGGACAGG TTCTTCTGTCTGTTCGCTGCAAGGACAGCAACAGTCACCATGCTCAGGAGGCTCTTCGCCGTGCAAAATTCAAGTTCCCTGGTCGCCAAAAGATTATTGT CAGCAGGAAGTGGGGCTTCACCAAGTTTAATCGCAATGATTATTTGAAGTTGAAGGCAGAGAACAAGATTATGTCAGATGGTGTGAATGCCAAGCTTCTT GGATGCCATGGACCCTTGGCCAACCGTCAGCCTGGAAGAGCATTCTTATCTGCTACTGCTTAG
AA sequence Show only first row Show all	>Potri.013G159600.2 pacid=42811033 polypeptide=Potri.013G159600.2.p locus=Potri.013G159600 ID=Potri.013G159600.2.v4.1 annot-version=v4.1 MGRRPARCYRQIKNKPYPKSRYCRGVPDSKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRIN KMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRNDYLKLKAENKIMSDGVNAKLL GCHGPLANRQPGRAFLSATA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Potri.013G159600 [exp]	0	1	RPL10.3
AT2G41840			Ribosomal protein S5 family pr...		Potri.016G055000 [exp]	4.24	0.9362	Pt-RPS2.3
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Potri.001G454101 [exp]	5.83	0.9222
AT1G18080		RACK1A_AT, ATAR...	RECEPTOR FOR ACTIVATED C KINAS...		Potri.015G041600 [exp]	10.58	0.9167	Pt-GBF1.2
AT4G09800		RPS18C	S18 ribosomal protein (.1)		Potri.002G051300 [exp]	14.17	0.9177
AT2G18110			Translation elongation factor...		Potri.015G094200 [exp]	14.96	0.9148	Pt-EEF1.1
AT3G09630			Ribosomal protein L4/L1 family...		Potri.016G084400 [exp]	16.97	0.9154	Pt-RPL4.2
AT1G07070			Ribosomal protein L35Ae family...		Potri.008G063200 [exp]	18.49	0.9023
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Potri.001G453900 [exp]	20.00	0.9123
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Potri.001G454000 [exp]	20.73	0.9158
AT3G04840			Ribosomal protein S3Ae (.1)		Potri.010G083200 [exp]	20.90	0.9017	RS3.1

Compare expression of checked genes

Potri.013G159600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.