Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01960 545 / 0 RING/U-box superfamily protein (.1) AT1G65040 57 / 4e-09 AtHrd1B homolog of yeast Hrd1, RING/U-box superfamily protein (.1.2.3) AT3G16090 58 / 8e-09 AtHrd1A homolog of yeast Hrd1, RING/U-box superfamily protein (.1) AT2G28920 50 / 4e-07 RING/U-box superfamily protein (.1) AT2G26350 50 / 1e-06 PEX10, ATPEX10 peroxin 10 (.1) AT5G37250 49 / 1e-06 RING/U-box superfamily protein (.1) AT3G16720 50 / 2e-06 ATL2 TOXICOS EN LEVADURA 2 (.1) AT4G25230 50 / 2e-06 RIN2 RPM1 interacting protein 2 (.1.2) AT4G12140 49 / 2e-06 RING/U-box superfamily protein (.1) AT1G18770 47 / 2e-06 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G111800 [exp] 528 / 0 AT5G01960 572 / 0.0 RING/U-box superfamily protein (.1) Potri.016G141200 [exp] 520 / 0 AT5G01960 546 / 0.0 RING/U-box superfamily protein (.1) Potri.019G132201 [exp] 496 / 5e-175 AT5G01960 377 / 2e-128 RING/U-box superfamily protein (.1) Potri.013G088400 [exp] 61 / 1e-09 AT3G16090 613 / 0.0 homolog of yeast Hrd1, RING/U-box superfamily protein (.1) Potri.019G051500 [exp] 60 / 2e-09 AT3G16090 661 / 0.0 homolog of yeast Hrd1, RING/U-box superfamily protein (.1) Potri.006G239500 [exp] 54 / 1e-07 AT2G20030 248 / 1e-78 RING/U-box superfamily protein (.1) Potri.014G040400 [exp] 50 / 9e-07 AT1G19310 226 / 4e-75 RING/U-box superfamily protein (.1) Potri.001G124000 [exp] 50 / 2e-06 AT4G25230 830 / 0.0 RPM1 interacting protein 2 (.1.2) Potri.003G109400 [exp] 50 / 3e-06 AT4G25230 790 / 0.0 RPM1 interacting protein 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000996 [exp] 511 / 6e-180 AT5G01960 626 / 0.0 RING/U-box superfamily protein (.1) Lus10011027 [exp] 505 / 2e-177 AT5G01960 619 / 0.0 RING/U-box superfamily protein (.1) Lus10023477 [exp] 57 / 2e-08 AT3G16090 650 / 0.0 homolog of yeast Hrd1, RING/U-box superfamily protein (.1) Lus10040359 [exp] 55 / 7e-08 AT3G16090 652 / 0.0 homolog of yeast Hrd1, RING/U-box superfamily protein (.1) Lus10023617 [exp] 52 / 7e-07 AT5G05810 219 / 1e-68 RING/U-box superfamily protein (.1) Lus10012975 [exp] 50 / 2e-06 AT2G20030 291 / 2e-95 RING/U-box superfamily protein (.1) Lus10034953 [exp] 50 / 2e-06 AT2G20030 278 / 2e-90 RING/U-box superfamily protein (.1) Lus10016303 [exp] 49 / 2e-06 AT1G19310 268 / 2e-91 RING/U-box superfamily protein (.1) Lus10011390 [exp] 49 / 4e-06 AT3G47160 233 / 3e-77 RING/U-box superfamily protein (.1.2) Lus10010791 [exp] 48 / 4e-06 AT1G19310 266 / 1e-90 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13920 [poplar] [flax] zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.013G160000.1 pacid=42811100 polypeptide=Potri.013G160000.1.p locus=Potri.013G160000 ID=Potri.013G160000.1.v4.1 annot-version=v4.1 ATGGAGATTTGTGGTGAAGGCAATTCTGGTGAAATCTATAGGAATTCTTCTTTAGGAAGCAGCAGTGTTGGTGGTGGTGGTGATGGTTATAGCAACAATC CAAGAAGGTATGGAATTAATATAGCAGCATCAAATTTGATACATGCTCCATTAACAACCCTTTTGGAATACTCGGGTATACTAGGAGGAAGCACCTCCAG TTATTCTCAAGAAAGGGAGCAACTGATTTCTTCTCCATCTACCGCTACTGGTGGTGGTGGTGGTGGTGGTCATCAGGAGGTTACAATTAGGATAATTGGC TCCGCAGAGAATGATCATGATGATGAACCCAATGCTTCCCCAAATGTTGAGGCGTTACCATATGGTCAACGAGGTGGGGTTGTGGAGGGGAATGCGAATA CTGAAAGCTCTATTTCTGATGGGTCTTCTGGGATTGCCACAGATTCATCATCTTCATCTTCTTCTTATCAGAGATATGATATTCAGAACTTGGCTAGGTG GATTGAGCACGTTCTTCCATTTTCTTTGCTGTTGCTTCTTGTTTTTGTTCGTCAACATTTGCAAGGCTTTTGTGCTGCGTTGTGGATTGCTGCAGTTTTA TTTAAATCAAATGATATTCTAAGGAGGCAGACAGCTCTAAAGGGAGAGAGAAAGAAGTCTGTTCTCCTAGGCATGACTGTAGTGTTGATTCTTCATGTGA TGTCAATTTATTGGTGGTATAGGAATGCTGACCTTCTATATCCATTGGTTTTACTTCCTCCATCCACAATACCTCCTTTCTGGCATGTTTTATTTATCAT CATTGTGAATGATGCTTTGGTGCGACAGGTAGCAATGGTGTTCAAATGCATGCTTTTGTTGTTTTACAAGAATAGCAGAGGCCACAATTACCGCAAACAG GGTCAAATGCTAACTCTGGTTGAGTATTTTCTGTTACTGTACCGTGCCTTGTTGCCAACACCTGTTTGGTATCGTTTCTTCTTAAACAGGGAATATGGAA GCTTTTTTTCGTCATTAGTCACAGGGTTATATTTAACCTTCAAGCTTACCACAGTTCTGAGGAAGGTCCAACTATTCTTCACTGCATTGCGGACCTTGTC ACATAAAGAAATGTACTATGGTTCTTATGCCACATCTGAACAGGTCAATGCAGTGGGGGATCTCTGTGCCATTTGCCAGGAGAAGATGCATGCTCCCATT TTACTACGCTGTAAACACATATTCTGTGAAGATTGTGTTTCTGAATGGTTTGATAGAGAAAGGACGTGTCCATTATGCAGGGCTTTGGTCAAATCAGCAG ATATTAAGTCATATAGTGACGGATCAACCAGTTTGTTCTTCCAGCTATTCTAA
AA sequence Show only first row Show all	>Potri.013G160000.1 pacid=42811100 polypeptide=Potri.013G160000.1.p locus=Potri.013G160000 ID=Potri.013G160000.1.v4.1 annot-version=v4.1 MEICGEGNSGEIYRNSSLGSSSVGGGGDGYSNNPRRYGINIAASNLIHAPLTTLLEYSGILGGSTSSYSQEREQLISSPSTATGGGGGGGHQEVTIRIIG SAENDHDDEPNASPNVEALPYGQRGGVVEGNANTESSISDGSSGIATDSSSSSSSYQRYDIQNLARWIEHVLPFSLLLLLVFVRQHLQGFCAALWIAAVL FKSNDILRRQTALKGERKKSVLLGMTVVLILHVMSIYWWYRNADLLYPLVLLPPSTIPPFWHVLFIIIVNDALVRQVAMVFKCMLLLFYKNSRGHNYRKQ GQMLTLVEYFLLLYRALLPTPVWYRFFLNREYGSFFSSLVTGLYLTFKLTTVLRKVQLFFTALRTLSHKEMYYGSYATSEQVNAVGDLCAICQEKMHAPI LLRCKHIFCEDCVSEWFDRERTCPLCRALVKSADIKSYSDGSTSLFFQLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01960			RING/U-box superfamily protein...		Potri.013G160000 [exp]	0	1
					Potri.019G037300 [exp]	3.46	0.6817
AT3G51620			PAP/OAS1 substrate-binding dom...		Potri.013G154900 [exp]	3.87	0.6911
AT2G42760			unknown protein		Potri.004G059900 [exp]	5.29	0.7014
AT1G53570		MAPKKK3, MAP3KA	MAP KINASE KINASE KINASE 3, mi...		Potri.005G062500 [exp]	6.32	0.6917	Pt-MAP3.1
AT4G24110			unknown protein		Potri.001G082500 [exp]	13.03	0.6542
AT5G65110		ATACX2, ACX2	acyl-CoA oxidase 2 (.1.2)		Potri.005G077600 [exp]	13.41	0.6722
AT2G43120			RmlC-like cupins superfamily p...		Potri.002G231900 [exp]	14.07	0.6438	Pt-PRN.2
AT1G15860			Domain of unknown function (DU...		Potri.003G180300 [exp]	15.16	0.6145
AT1G27752			Ubiquitin system component Cue...		Potri.014G016900 [exp]	20.39	0.6624
AT3G03160			unknown protein		Potri.015G035400 [exp]	20.44	0.6221

Compare expression of checked genes

Potri.013G160000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.