Plant FIBer expression Database

Potri.013G160100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G30530 266 / 8e-85 unknown protein
AT5G01970 263 / 5e-84 unknown protein
AT1G30050 206 / 1e-61 unknown protein
AT4G02800 111 / 5e-27 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G132300
[exp]
523 / 0 AT2G30530 253 / 9e-80 unknown protein
Potri.006G111900
[exp]
282 / 1e-89 AT5G01970 352 / 2e-118 unknown protein
Potri.016G141300
[exp]
271 / 8e-86 AT5G01970 353 / 2e-119 unknown protein
Potri.002G053100
[exp]
104 / 2e-24 AT4G02800 276 / 3e-91 unknown protein
Potri.005G209400
[exp]
101 / 2e-23 AT4G02800 291 / 3e-97 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035153
[exp]
337 / 2e-111 AT5G01970 264 / 8e-85 unknown protein
Lus10031947
[exp]
334 / 2e-111 AT5G01970 263 / 1e-85 unknown protein
Lus10019115
[exp]
320 / 4e-105 AT2G30530 267 / 5e-86 unknown protein
Lus10034444
[exp]
313 / 1e-102 AT2G30530 268 / 3e-86 unknown protein
Lus10035609
[exp]
144 / 1e-38 AT1G30050 187 / 5e-56 unknown protein
Lus10003240
[exp]
126 / 1e-30 AT5G01990 610 / 0.0 Auxin efflux carrier family protein (.1)
Lus10022037
[exp]
108 / 4e-26 AT4G02800 276 / 1e-91 unknown protein
Lus10014668
[exp]
101 / 2e-23 AT4G02800 262 / 1e-85 unknown protein
Lus10000658
[exp]
100 / 3e-23 AT4G02800 266 / 1e-87 unknown protein
Lus10042577
[exp]
48 / 6e-06 AT4G02800 109 / 1e-28 unknown protein
PFAM info
Representative CDS sequence
>Potri.013G160100.1 pacid=42811714 polypeptide=Potri.013G160100.1.p locus=Potri.013G160100 ID=Potri.013G160100.1.v4.1 annot-version=v4.1
ATGGCATATAGAAGAAGGCAGCAGCAGCAGCTCGAGGAGGAAACATCAGGCACAAGCAGCAGAAGCAGGCCATCTCCAATCACGACAACAACATCGTCCT
CTTCTTATTCCTTGGACGAAGAGGATTGGAGTTACGAAGATGTTCAAATTCCAAATGATAGTAACATTAAGAATAAGAGCAATTCCACATCCTTGGCTAC
CAAAGCCATAAGAGCTTCTTCCGCTGCCCGCAGAGACTCCTCTCTCTCCTCCGCTTACGCCTTCACTAATCACCCCTCCCCCTCCACTTCCCCCTCCCCT
GTCTCTTCCAATTTCAATTCTTCTTCTACCAAGGAGGAGGAATCGAACAAGGCCTATTATCACGAGTACACATCAATGAAAGCAATGAAGGAAACAAAGC
AGCAGCAAGGGTTTTGGGGTACTCTTGCTAGAAAAGCTAAATCTATTCTTGATGATGATTTCAATACTAATAACAACAATGCTCCTTCTCCTCCTCAAAA
GCAAAAGCAACACCAACACCAACAACTGGATTCAGCTACTGACAGGACCACTACTAGGCAGCATCATGTCCCTGACTCTGCTACTATGCCCAAGAACCAA
TACCCTTCTCACAAGACCTATCGGAAAACAGAGAGTCCTGCATTCCAGAAGGGACTCAATGCAATCTCATCTTCCCTGAATTATATCGGTAATGCTGTTG
AGGATGGTCTGACAAAAGTGGAGAACCGGACTGCAGATATTATCCAAGAAACTCGTAAGCATATTCGGAAAAAGCCTAATGGTGCTGCTGGACAGAATCA
GGCAACCAATCGGAGTAGCATGTGGCAACAACCCCAAATGCAGACCAATAGACAACAACCCCAGAAAGAAACTGAGCAAGAACTTCAACTGAAGGCATCT
CGCGATGTTGCGATGGCAATGGCTGCCAAGGCAAAGCTTCTTCTTCGAGAGTTGAAAACTGTTAAAACAGATTTGGCTTTTGCTAAGGAGCGATGTGCTC
AGCTGGAGGAGGAAAATAAATTCCTCAGGGAGAATCATGAAAGGGGAGAAAATCTGGAAGATGATGATTTGATTCGGCTTCAACTTGAAACACTGTTAGC
AGAGAAGGCCAGATTGGCACATGAGAACTCAGTCTATGCTCGTGAGAACCGCTTTTTAAGGGAGGTGGTTGAATATCACCAGCTTACTATGCAGGATGTT
GTATACTTAGATGAGGGCACTGAAGAAGTAACTGAAGTTTATCCCGTGAAAGTTGTCTCCAATACTCCCTCCATCCCCCCTACGTCACCCCCTCCACTGT
ATACAGAGGCTTCCCATGGTACAAGTCTGCCTGTGACTCAAGACATCTTGCCTCATCCTGTCCCCCCACCGGGGTCTGTAGAGGTTTCTAAGAGTGCCAC
ATCACCAAATTCATATGCTCGACATCAATTGCAGCAGATATAA
AA sequence
>Potri.013G160100.1 pacid=42811714 polypeptide=Potri.013G160100.1.p locus=Potri.013G160100 ID=Potri.013G160100.1.v4.1 annot-version=v4.1
MAYRRRQQQQLEEETSGTSSRSRPSPITTTTSSSSYSLDEEDWSYEDVQIPNDSNIKNKSNSTSLATKAIRASSAARRDSSLSSAYAFTNHPSPSTSPSP
VSSNFNSSSTKEEESNKAYYHEYTSMKAMKETKQQQGFWGTLARKAKSILDDDFNTNNNNAPSPPQKQKQHQHQQLDSATDRTTTRQHHVPDSATMPKNQ
YPSHKTYRKTESPAFQKGLNAISSSLNYIGNAVEDGLTKVENRTADIIQETRKHIRKKPNGAAGQNQATNRSSMWQQPQMQTNRQQPQKETEQELQLKAS
RDVAMAMAAKAKLLLRELKTVKTDLAFAKERCAQLEEENKFLRENHERGENLEDDDLIRLQLETLLAEKARLAHENSVYARENRFLREVVEYHQLTMQDV
VYLDEGTEEVTEVYPVKVVSNTPSIPPTSPPPLYTEASHGTSLPVTQDILPHPVPPPGSVEVSKSATSPNSYARHQLQQI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G30530 unknown protein Potri.013G160100
[exp]
0 1
AT3G43590 zinc knuckle (CCHC-type) famil... Potri.004G193500
[exp]
1.41 0.7747
AT2G29210 splicing factor PWI domain-con... Potri.009G036900
[exp]
1.73 0.8338
AT1G58060 RNA helicase family protein (.... Potri.004G222900
[exp]
6.92 0.7734
AT5G37370 ATSRL1 PRP38 family protein (.1.2.3.4... Potri.004G075700
[exp]
8.06 0.7235
AT5G06830 unknown protein Potri.006G059500
[exp]
11.04 0.6649
AT3G51950 C3HZnF Zinc finger (CCCH-type) family... Potri.001G020300
[exp]
12.24 0.7160
AT5G05660 EBI, ATNFXL2 NFX1-like 2, EARLY BIRD, Arabi... Potri.010G188700
[exp]
13.26 0.6991
AT1G30970 C2H2ZnF SUF4 suppressor of FRIGIDA4, zinc f... Potri.001G160700
[exp]
14.14 0.6951
AT3G52660 RNA-binding (RRM/RBD/RNP motif... Potri.006G212400
[exp]
14.49 0.7322
AT1G11420 ATDUF2 DOMAIN OF UNKNOWN FUNCTION 724... Potri.014G117800
[exp]
15.74 0.7350

Potri.013G160100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.