Plant FIBer expression Database

Potri.013G160200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF14009 DUF4228 Domain of unknown function (DUF4228)
Representative CDS sequence
>Potri.013G160200.1 pacid=42812383 polypeptide=Potri.013G160200.1.p locus=Potri.013G160200 ID=Potri.013G160200.1.v4.1 annot-version=v4.1
ATGGGCGGCTCCGTTTCATGCCCCTGTGCCTCAGGGGAATCAGGGAGGCATGTCCTTGTTATCAAACAAAATGGTCAGGTGATGAAAATCAAGGCAGGCA
CACACGTTAAAGAGATCCTAGCATCTAACCCACGTAATTCGATACTAAGATGCAGGTCAGACCAATCACTACTGGTACTGCCGGATTCCATTGAGCTTCG
CAGTAATGGGTTATACTTCCTGGTTGAAGAAGGCCAGCGAGCTATAGACAAGGACACCTTCGACGGTCTAATGAGGTTGGCACGTTCAAGAGGGGCTGCA
GGTCCCAAATCTACCCATCACAAGAAGATGCCGTCAGATTGTTCACCCGGCACAAACGATAATGAAGATATTGGGCCGCGGCTGAACTGGGGTCAGATTG
CTGTGCTGAACGCTTGTGACGTTGAGTACCAGAAAACCTCATCGTGGAGACCAGCCCTGCATCCCATACCCGAGCTTCGCTCTCTAGAAGAAGATCGGTA
A
AA sequence
>Potri.013G160200.1 pacid=42812383 polypeptide=Potri.013G160200.1.p locus=Potri.013G160200 ID=Potri.013G160200.1.v4.1 annot-version=v4.1
MGGSVSCPCASGESGRHVLVIKQNGQVMKIKAGTHVKEILASNPRNSILRCRSDQSLLVLPDSIELRSNGLYFLVEEGQRAIDKDTFDGLMRLARSRGAA
GPKSTHHKKMPSDCSPGTNDNEDIGPRLNWGQIAVLNACDVEYQKTSSWRPALHPIPELRSLEEDR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.013G160200
[exp]
0 1
AT4G01290 unknown protein Potri.004G073400
[exp]
19.36 0.9713
AT2G33460 RIC1 ROP-interactive CRIB motif-con... Potri.008G168900
[exp]
22.84 0.9699 Pt-RIC1.1
AT5G66110 HIPP27 heavy metal associated isopren... Potri.005G110400
[exp]
23.21 0.9685
AT1G77780 Glycosyl hydrolase superfamily... Potri.010G088500
[exp]
26.53 0.9675
Potri.009G036600
[exp]
28.30 0.9673
AT4G11720 HAP2, GCS1 GENERATIVE CELL-SPECIFIC 1, ha... Potri.001G109000
[exp]
29.79 0.9669
Potri.014G170000
[exp]
31.17 0.9470
AT1G01800 NAD(P)-binding Rossmann-fold s... Potri.002G156866
[exp]
31.52 0.9668
AT1G78955 CAMS1 camelliol C synthase 1 (.1) Potri.004G132500
[exp]
32.32 0.8897 LCOSC2.4
Potri.006G009300
[exp]
35.91 0.9667

Potri.013G160200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.