Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	STA1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58270 1048 / 0 ABCB25, ATATM3, STA1 STARIK 1, ARABIDOPSIS THALIANA ABC TRANSPORTER OF THE MITOCHONDRION 3, ATP-binding cassette B25, ABC transporter of the mitochondrion 3 (.1) AT4G28630 924 / 0 ABCB23, ATATM1, ATM1 ATP-binding cassette B23, ABC transporter of the mitochondrion 1 (.1) AT4G28620 889 / 0 ABCB24, ATATM2, ATM2 ARABIDOPSIS THALIANA ABC TRANSPORTER OF THE MITOCHONDRION 2, ATP-binding cassette B24, ABC transporter of the mitochondrion 2 (.1) AT1G10680 230 / 3e-63 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT5G39040 218 / 2e-61 AtALS1, ABCB27, ALS1, ATTAP2 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) AT2G36910 224 / 3e-61 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT1G27940 222 / 2e-60 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1) AT3G28860 221 / 2e-60 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT4G18050 219 / 1e-59 ABCB9, PGP9 ATP-binding cassette B9, P-glycoprotein 9 (.1) AT3G28380 218 / 2e-59 ABCB17, PGP17 ATP-binding cassette B17, P-glycoprotein 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G132800 [exp] 1183 / 0 AT5G58270 1002 / 0.0 STARIK 1, ARABIDOPSIS THALIANA ABC TRANSPORTER OF THE MITOCHONDRION 3, ATP-binding cassette B25, ABC transporter of the mitochondrion 3 (.1) Potri.015G059700 [exp] 249 / 8e-73 AT5G39040 874 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.015G059800 [exp] 244 / 7e-71 AT5G39040 887 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.015G059600 [exp] 239 / 4e-69 AT5G39040 874 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.018G141300 [exp] 232 / 5e-64 AT3G28345 1093 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G081100 [exp] 223 / 6e-61 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Potri.011G133800 [exp] 222 / 1e-60 AT3G28345 1268 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G097200 [exp] 216 / 1e-60 AT5G39040 892 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.006G123900 [exp] 221 / 5e-60 AT2G36910 2138 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007987 [exp] 238 / 9e-69 AT5G39040 875 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Lus10021145 [exp] 232 / 2e-66 AT5G39040 868 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Lus10032911 [exp] 239 / 5e-66 AT3G28860 960 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10015595 [exp] 236 / 4e-65 AT3G28860 971 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10017270 [exp] 234 / 1e-64 AT1G27940 1686 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Lus10000910 [exp] 226 / 1e-62 AT4G25960 808 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Lus10004571 [exp] 225 / 1e-61 AT4G25960 1732 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Lus10036616 [exp] 213 / 1e-61 AT3G28345 479 / 6e-159 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10017271 [exp] 224 / 5e-61 AT1G27940 1689 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Lus10030674 [exp] 221 / 3e-60 AT3G28860 2271 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0241 [poplar] [flax] ABC_membrane PF00664 [poplar] [flax] ABC_membrane ABC transporter transmembrane region
Representative CDS sequence Show only first row Show all	>Potri.013G160500.1 pacid=42811737 polypeptide=Potri.013G160500.1.p locus=Potri.013G160500 ID=Potri.013G160500.1.v4.1 annot-version=v4.1 ATGTTGGCGGCGGCGGCGGCGGCGGCATCTAAGAAGTGCTCTAGGGCTCATAACAACCTCCTCCTTGGCAATCACAACATCAAGAATAACCCTCTCTTGT CTTTATGCTTCTTCAACCATTCCCATTCCATTCATACCCCTAATCATAATAATAGGCCAAGATGCTTTCCTGGACGGAGCAGCGGCACTGCTATTTTCGC CAATTCCCCCTCCATCAGCAACAGATCATTCACCACTCCATCATGGAATCATCGTCGCTATCTCAATCTCAATGCTTTCCTATCCAATCCTGCTTCCTCC TCCTCTACTCCTCCTTTCCGGCCACCGAACTCTGTGCTGAATGGCCATGCCTTATTCTCAACAATGTCAGCTCCAAAGGATAAAGATGGTGTTGCAAATA AAGCTCCTCCTTCTTCATCAGCTACTACTGCTACTAATAAATCAGACCAACAAGTTGCTGACACGAAAATCCTACGCACTCTTGCTAGTTACTTGTGGAT GGAAGATAACCCCGAATTCCGCTTGAGGGTTGTTCTCGCCCTTGGGTTCCTTGTGGGTGCTAAGGTTTTGAATGTTCAAGTTCCTTTTCTTTTTAAGCTC GCTGTTGATTGGTTGACTACTGCCACTGGCAATGCTGCTGCTCTTGCTTCCTTCACCACTGCCAATTCCACTCTCCTTGCTCTCTTTGCTACCCCTGCTT CTGTTCTCATTGGTTATGGCATTGCCCGCACCGGATCCTCTGCTTTCAATGAATTGAGGACTGCTGTGTTTTCTAAAGTAGCTCTGAGAACAATCCGATC TGTTTCTAGGAAGGTCTTTTCACATTTGCATGAGCTTGACCTCCGCTATCATCTTAGTCGAGAAACTGGTGGATTAAGTAGAACAATTGATCGTGGTAGC CGTGCAATAAACTTCATCCTCTCATCTATGGTGTTCAACGTTGTACCGACTATTTTAGAGATCTCTATGGTGGCGGGTATACTGGCATACAAATTTGGCG CCCCTTTCGCATGGATCACTTCACTCTCAGTGGCTGCATATGTTACTTTCACGTTGTCTGTGACACAGTGGAGGACCAAGTTCAGGAAGGCCATGAATAA AGCTGATAATGATGCTAGTACAAAGGCAATTGATTCCCTTATCAATTATGAGACGGTCAAATATTTCAACAACGAAGCTTATGAAGCTGACAGATATGAC GAGTACTTAAAGAGATATGAAGACACTGCCTTGAAAACATCACGAAGTCTTGCCTTTCTGAATTTTGGCCAAAATGTGATTTTTAGCACAGCTCTGTCAA CAGCTATGGTTTTATGTTCACATGGGATCATGAATGGCCAGATGACAGTTGGTGATTTGGTAATGGTAAATGGACTTCTCTTCCAGCTCTCCCTTCCACT TAATTTCCTTGGCAGTGTTTACCGTGAGACCATACAGAGTCTTGTTGACATGAAGTCCTTGTTTCAATTACTCGAGGAGAAAGCTGATATTAGAGATAAG GATGATGCAAAGCCTCTTATATTAAAGGGAGGTGACATTCAATTTGACAATGTACACTTCAGCTACTTGGCAGAAAGAAAAATTCTTGATGGCGTAGCTT TTTCTATACCAGCAGGAAAAAGTGTGGCTATTGTTGGAACAAGTGGTAGTGGTAAGTCAACCATTCTTAGATTACTCTACAGATTTTTCAACACTAATTC TGGAAATATAAGAATTGATGGTCAAGATATAAGGGATGTAACACTGGATAGTTTGCGGAGGTCTATTGGTGTTGTCCCTCAAGACATAGTACTTTTCAAT GATACAATATTTCACAACATTCATTATGGTCGTCTTTCAGCAACAAAAGAGGAAGTCTATGATGCTGCCCGACAAGCAGCAATTCATGACACTATCATGA ACTTCCCTGAGAAATATTCTACTATAGTAGGGGAACGAGGGCTCAAGTTAAGTGGTGGTGAGAAGCAGCGTGTGGCATTGGCTCGTGCATTTTTGAAAGT GGCTCCTATTCTGCTATGTGATGAAGCTACAAGTGCGCTTGACAGCACCACAGAAGCAGAGATTCTAAATGCATTGAAATCATTATCCAGCAATCGAACT TCAGTTTTCATTGCACATAGGCTTACAACTGCTATGCAGTGTGATGAGATAATAGTTTTGGAGAATGGTAAAGTGGTTGAACAGGGACCCCATGAAGTTC TCCTGACCAAGGCAGGTAGATACGCACAGCTCTGGACACAGCAAAACAGTACTGTAGATGCCCTTGATTCAGCCATTAAATTGGAGGCATAG
AA sequence Show only first row Show all	>Potri.013G160500.1 pacid=42811737 polypeptide=Potri.013G160500.1.p locus=Potri.013G160500 ID=Potri.013G160500.1.v4.1 annot-version=v4.1 MLAAAAAAASKKCSRAHNNLLLGNHNIKNNPLLSLCFFNHSHSIHTPNHNNRPRCFPGRSSGTAIFANSPSISNRSFTTPSWNHRRYLNLNAFLSNPASS SSTPPFRPPNSVLNGHALFSTMSAPKDKDGVANKAPPSSSATTATNKSDQQVADTKILRTLASYLWMEDNPEFRLRVVLALGFLVGAKVLNVQVPFLFKL AVDWLTTATGNAAALASFTTANSTLLALFATPASVLIGYGIARTGSSAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGGLSRTIDRGS RAINFILSSMVFNVVPTILEISMVAGILAYKFGAPFAWITSLSVAAYVTFTLSVTQWRTKFRKAMNKADNDASTKAIDSLINYETVKYFNNEAYEADRYD EYLKRYEDTALKTSRSLAFLNFGQNVIFSTALSTAMVLCSHGIMNGQMTVGDLVMVNGLLFQLSLPLNFLGSVYRETIQSLVDMKSLFQLLEEKADIRDK DDAKPLILKGGDIQFDNVHFSYLAERKILDGVAFSIPAGKSVAIVGTSGSGKSTILRLLYRFFNTNSGNIRIDGQDIRDVTLDSLRRSIGVVPQDIVLFN DTIFHNIHYGRLSATKEEVYDAARQAAIHDTIMNFPEKYSTIVGERGLKLSGGEKQRVALARAFLKVAPILLCDEATSALDSTTEAEILNALKSLSSNRT SVFIAHRLTTAMQCDEIIVLENGKVVEQGPHEVLLTKAGRYAQLWTQQNSTVDALDSAIKLEA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58270		ABCB25, ATATM3,...	STARIK 1, ARABIDOPSIS THALIANA...		Potri.013G160500 [exp]	0	1	STA1.2
AT3G18370		NTMCTYPE3, ATSY...	C2 domain-containing protein (...		Potri.015G046700 [exp]	1.00	0.8597
AT1G20670			DNA-binding bromodomain-contai...		Potri.004G206200 [exp]	3.00	0.8356
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Potri.001G299000 [exp]	5.74	0.7807
AT2G48110		MED33B, REF4	reduced epidermal fluorescence...		Potri.014G138400 [exp]	6.32	0.8381
AT2G22010		RKP	related to KPC1 (.1.2)		Potri.005G083800 [exp]	12.80	0.8224
AT4G11790			Pleckstrin homology (PH) domai...		Potri.001G111100 [exp]	13.26	0.7744
AT3G10650		AtNUP1	unknown protein		Potri.008G014800 [exp]	20.24	0.8215
AT5G17680			disease resistance protein (TI...		Potri.019G069500 [exp]	20.78	0.8030
AT2G18900			Transducin/WD40 repeat-like su...		Potri.006G166500 [exp]	22.13	0.8056
AT3G12670		EMB2742	embryo defective 2742, CTP syn...		Potri.010G176500 [exp]	22.22	0.7474

Compare expression of checked genes

Potri.013G160500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.