Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58260 280 / 3e-96 NdhN NADH dehydrogenase-like complex N, oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034438 [exp] 281 / 2e-96 AT5G58260 286 / 7e-99 NADH dehydrogenase-like complex N, oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor (.1.2) Lus10019123 [exp] 218 / 2e-72 AT5G58260 204 / 1e-67 NADH dehydrogenase-like complex N, oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11909 [poplar] [flax] NdhN NADH-quinone oxidoreductase cyanobacterial subunit N
Representative CDS sequence Show only first row Show all	>Potri.013G160600.1 pacid=42810724 polypeptide=Potri.013G160600.1.p locus=Potri.013G160600 ID=Potri.013G160600.1.v4.1 annot-version=v4.1 ATGGCATCTACCTGCAGCCTGCAACAACATGGGAGAGCACCGGCCTCGATCAATCTCCACCACAAACAGCAGCGCTCTTGCTCCCCAAGGATCAGTGTAA TGGTAGGAAACAGAAATGTTATGCTGCTGCAGGGATTTATTTATAATAACAATGTATCTAAGAGGAGACCAACTGCAGGGTTGGTGGTGAAGTGTAGTGG GATAGGATTAGGTGACTTCATTGGAGGGGATTTGGTAAAATTTGATATAGGGCAGTGGCTGTCAGATGTGGAGGAGCACAAAGCCCTTGCCATTTACCCC CCTCACGAAGGAGGCTACGAGGGTCGTTACCTTAACCGCCTCATCCGCCAGGGCTACTACTTCCTTGACCTCAGTGCTCGTGGCCTTGGGGATCCTGAGA CCACCCTCACCAAAGTTCATCCTGTTTGTCCTGCACATCTAGGGAAGCAACCCATAGCAAGGTGGTATTTCCCCCCAGAAGTTGATTTCAGACTTGAACA CCTGCCCCCTAATGCCAAGGGACTTGTGGTTTGGATAATCGAAGCCAAGGTTTTGTCCAAGGCGGAACTGCAGTTTCTTGCTCTGCTGCCAACACTCCGC CCTAACGTCAGAGTCGTTGCTGAATGTGGAAACTGGAGAAAGTTCGTGTGGAAACCACTCAAAGAGATAGCTGGACTAACCGCAGAGGGAGCTTGA
AA sequence Show only first row Show all	>Potri.013G160600.1 pacid=42810724 polypeptide=Potri.013G160600.1.p locus=Potri.013G160600 ID=Potri.013G160600.1.v4.1 annot-version=v4.1 MASTCSLQQHGRAPASINLHHKQQRSCSPRISVMVGNRNVMLLQGFIYNNNVSKRRPTAGLVVKCSGIGLGDFIGGDLVKFDIGQWLSDVEEHKALAIYP PHEGGYEGRYLNRLIRQGYYFLDLSARGLGDPETTLTKVHPVCPAHLGKQPIARWYFPPEVDFRLEHLPPNAKGLVVWIIEAKVLSKAELQFLALLPTLR PNVRVVAECGNWRKFVWKPLKEIAGLTAEGA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58260		NdhN	NADH dehydrogenase-like comple...		Potri.013G160600 [exp]	0	1
AT5G08050			Protein of unknown function (D...		Potri.015G058600 [exp]	1.00	0.9903
AT5G52190			Sugar isomerase (SIS) family p...		Potri.015G140600 [exp]	1.41	0.9830
AT3G04790		EMB3119	EMBRYO DEFECTIVE 3119, Ribose ...		Potri.013G039400 [exp]	3.00	0.9700
AT1G42550		PMI1	plastid movement impaired1 (.1...		Potri.005G255500 [exp]	4.89	0.9724
AT1G67740		YCF32, PSBY	photosystem II BY (.1)		Potri.008G181900 [exp]	6.00	0.9749	PSBY.1
AT4G26530			Aldolase superfamily protein (...		Potri.001G468100 [exp]	6.92	0.9583	Pt-FBA.2
AT5G07900			Mitochondrial transcription te...		Potri.001G035200 [exp]	7.21	0.9745
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Potri.001G151300 [exp]	7.41	0.9744	Lil3_3,Pt-LIL3.1
AT4G24930			thylakoid lumenal 17.9 kDa pro...		Potri.015G097700 [exp]	8.00	0.9650
AT1G34000		OHP2	one-helix protein 2 (.1)		Potri.002G065000 [exp]	8.12	0.9682	Lil6_1,OHP2.2

Compare expression of checked genes

Potri.013G160600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.