Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24910 468 / 5e-161 ELA1, CYP714A1 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) AT5G24900 446 / 8e-153 ELA2, CYP714A2 EUI-like p450 A2, cytochrome P450, family 714, subfamily A, polypeptide 2 (.1) AT2G26710 318 / 7e-103 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT5G38450 309 / 3e-99 CYP735A1 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) AT4G27710 306 / 2e-98 CYP709B3 "cytochrome P450, family 709, subfamily B, polypeptide 3", cytochrome P450, family 709, subfamily B, polypeptide 3 (.1) AT1G67110 300 / 6e-96 CYP735A2 "cytochrome P450, family 735, subfamily A, polypeptide 2", cytochrome P450, family 735, subfamily A, polypeptide 2 (.1) AT2G46950 295 / 3e-93 CYP709B2 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) AT5G52400 290 / 6e-92 CYP715A1 "cytochrome P450, family 715, subfamily A, polypeptide 1", cytochrome P450, family 715, subfamily A, polypeptide 1 (.1) AT3G14620 281 / 8e-89 CYP72A8 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) AT3G14640 281 / 1e-88 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G026200 [exp] 668 / 0 AT5G24910 488 / 8e-169 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Potri.008G026300 [exp] 662 / 0 AT5G24910 486 / 5e-168 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Potri.019G064200 [exp] 510 / 6e-178 AT5G24910 652 / 0.0 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Potri.010G116300 [exp] 452 / 4e-155 AT5G24910 376 / 3e-125 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Potri.017G114200 [exp] 344 / 7e-113 AT5G38450 724 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Potri.004G100400 [exp] 341 / 8e-112 AT5G38450 734 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Potri.006G154500 [exp] 319 / 4e-103 AT2G26710 789 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.006G022200 [exp] 318 / 9e-103 AT2G46950 527 / 0.0 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) Potri.015G145100 [exp] 312 / 2e-100 AT5G52400 646 / 0.0 "cytochrome P450, family 715, subfamily A, polypeptide 1", cytochrome P450, family 715, subfamily A, polypeptide 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008423 [exp] 479 / 3e-165 AT5G24910 462 / 9e-159 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Lus10033044 [exp] 323 / 3e-104 AT2G26710 803 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10039234 [exp] 321 / 8e-104 AT5G52400 653 / 0.0 "cytochrome P450, family 715, subfamily A, polypeptide 1", cytochrome P450, family 715, subfamily A, polypeptide 1 (.1) Lus10033555 [exp] 318 / 1e-102 AT5G38450 694 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Lus10017595 [exp] 317 / 3e-102 AT5G38450 697 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Lus10026085 [exp] 315 / 2e-101 AT2G46960 375 / 6e-125 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) Lus10017775 [exp] 309 / 4e-98 AT3G14630 359 / 2e-117 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) Lus10026084 [exp] 304 / 3e-97 AT2G26710 375 / 6e-125 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10017771 [exp] 288 / 1e-91 AT2G26710 705 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10016310 [exp] 285 / 6e-90 AT1G75130 596 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.013G160800.1 pacid=42811370 polypeptide=Potri.013G160800.1.p locus=Potri.013G160800 ID=Potri.013G160800.1.v4.1 annot-version=v4.1 ATGGAACTTGTGTTACTCATTTCACTTGCAGTAGTGATAACCTTTCTTGGATTGCTAGAGCTTTTGTATTCTGGGCTGGTGCTAAAACCAGAAAGGCTTC GTTCTGTACTAAGGAAGCAAGGCATTAGGGGACCAAGTCCATCCCTGCTGCTTGGAAACATAAGCGAGATCAGGAAGTCTCAATCCACAACAGTAAAGGC TTCTACAAATGAACCACCGGTTTTCCACAACTGTGCTGCTACCCTCTTTCCATTTTTTGAGCAATGGAGGAAGCAATATGGTCCAGTATTTGTATTTTCG TTGGGCAACACACAAATATTATACGTGAGCCGGGCTGATGTGGTGAGAGAAATTAGTACATGCACATCATTAGAATTTGGGAAGCCTTCATATCAGCAGA AAGAACTCGGTTCTTTGCTTGGTCAGGGCATTCTGACTTCAAATGGGAAAGTTTGGGCCCATCAGAGGAAAATCATCGCCCCTGAATTATACGGTGACAA GGTTAAGGGAATGATGAGCTTGATAATTGAATCCACCACTGTGCTGCTAAACTCATGGAAGAGTAGAATTGATAAAGAGGGTGGAGTAGCAGAGATCAAA ATTGACGAGGGTATGAGAAGCTTCTCCGGAGATGTCATCTCAAGAGCCTGTTTTGGGAGCAATTATTCCGAAGGAGCAGAAATTTTCTCGAGACTAAGAG ATCTTCAGGAGGCTATGTCCAAGAAAAGTCTATCCACTGGAATTCCTGGCATGAGATATATTCCCACCAAGAACAATAGAGAAGCATGGGCGTTAGAGAA ATACGTCCGCAATTTGATACTCGAAATAGTCAAAGAGAGAAAGGAAACTGCACATGAGAAGGATCTCTTGCAAATGGTCCTTGAGAGTGCCAAAACTAGC AACCTGGGACAGGATGCAATGGACCGGTTCATTGTTGATAACTGCAAGAATATATACTTGGCAGGGTATGAGACTACAGCAGTTTCTGCCACATGGTGCC TCATGCTGTTGGCTGCAAATCAAGAATGGCAGGATCGTGTCCGTGCAGAAGTTCTTGAAGTCTGTGGATCAGGTTGTCTTCCAGACGCAGATATGCTTCG CAAGATGAAACAGCTAAATATGGTGATTCATGAATCGTTGCGACTTTATCCACCAGTGGCGGTGGTGTCAAGGGAGGCCTTTAAGGAGATGAAATTTGGG GGCATTACCGTTCCCAAGGGTGTGAATGTGTGGACAATGGTGCTGACACTGCATACTGATCCTGAAGTGTGGGGACCGGATGCATACAGGTTCAACCCAG ATAGATTTGCAAAAGGCATAACAGGTGCTTGCAAGCTCCCACACCTATACATGCCATTTGGTGTTGGGCCTCGGATGTGTCTTGGACAGAACTTGGCTAT TGCTGAACTCAAGATACTGATAGCTCTCATTCTGTCACAATTCTCTCTCTCCCTCTCACCCAAATACATTCACTCGCCCGCTCTTAGGTTGGTCATAGAG CCAGAACGTGGAGTTGATCTCTTGATAAAGACGTTGTGA
AA sequence Show only first row Show all	>Potri.013G160800.1 pacid=42811370 polypeptide=Potri.013G160800.1.p locus=Potri.013G160800 ID=Potri.013G160800.1.v4.1 annot-version=v4.1 MELVLLISLAVVITFLGLLELLYSGLVLKPERLRSVLRKQGIRGPSPSLLLGNISEIRKSQSTTVKASTNEPPVFHNCAATLFPFFEQWRKQYGPVFVFS LGNTQILYVSRADVVREISTCTSLEFGKPSYQQKELGSLLGQGILTSNGKVWAHQRKIIAPELYGDKVKGMMSLIIESTTVLLNSWKSRIDKEGGVAEIK IDEGMRSFSGDVISRACFGSNYSEGAEIFSRLRDLQEAMSKKSLSTGIPGMRYIPTKNNREAWALEKYVRNLILEIVKERKETAHEKDLLQMVLESAKTS NLGQDAMDRFIVDNCKNIYLAGYETTAVSATWCLMLLAANQEWQDRVRAEVLEVCGSGCLPDADMLRKMKQLNMVIHESLRLYPPVAVVSREAFKEMKFG GITVPKGVNVWTMVLTLHTDPEVWGPDAYRFNPDRFAKGITGACKLPHLYMPFGVGPRMCLGQNLAIAELKILIALILSQFSLSLSPKYIHSPALRLVIE PERGVDLLIKTL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24910		ELA1, CYP714A1	EUI-like p450 A1, cytochrome P...		Potri.013G160800 [exp]	0	1
					Potri.010G125900 [exp]	2.23	0.8472
AT5G64810	WRKY	ATWRKY51, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.007G079800 [exp]	4.69	0.8201
AT5G50915	bHLH	bHLH137	basic helix-loop-helix (bHLH) ...		Potri.001G062900 [exp]	4.89	0.8096
AT3G52870			IQ calmodulin-binding motif fa...		Potri.006G114700 [exp]	19.36	0.7795
AT3G56710		SIB1	sigma factor binding protein 1...		Potri.019G013750 [exp]	23.81	0.7738
AT4G21350		PUB8, B80	plant U-box 8 (.1)		Potri.004G028800 [exp]	45.16	0.7404
AT3G10050		OMR1	L-O-methylthreonine resistant ...		Potri.006G118400 [exp]	50.28	0.7648
					Potri.003G184601 [exp]	51.76	0.7617
AT3G51480		ATGLR3.6	glutamate receptor 3.6 (.1)		Potri.005G102600 [exp]	52.64	0.6994
					Potri.005G040650 [exp]	54.20	0.7468

Compare expression of checked genes

Potri.013G160800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.