Plant FIBer expression Database

Potri.013G161000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G58250 236 / 2e-79 EMB3143 EMBRYO DEFECTIVE 3143, unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031946
[exp]
241 / 1e-80 AT5G58250 227 / 5e-75 EMBRYO DEFECTIVE 3143, unknown protein
Lus10035110
[exp]
232 / 2e-77 AT5G58250 222 / 1e-73 EMBRYO DEFECTIVE 3143, unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF10674 Ycf54 Protein of unknown function (DUF2488)
Representative CDS sequence
>Potri.013G161000.1 pacid=42811208 polypeptide=Potri.013G161000.1.p locus=Potri.013G161000 ID=Potri.013G161000.1.v4.1 annot-version=v4.1
ATGTTAAGCCTAGCAGTGGGGTCATCAGTTGCTGCAATGAACAAGGTTTCCATACATTATACTGTGAATTATGGTAATGGTAGTGGGAAATCCACAGCCA
CACAGTTTGGCTTTATCAAGGGATCACAGCAACCACCATCTCTCCTTTCCGCTACTACCAATATTTCCTCCTCCTTTAAGACTGCCGTTGCCGCTGTTGA
TTCCAACGATCTCACTTCCTCTCCCACTCCTCCTGACAAGCAAGAAGCCAACAAGTACTACTTTGTTGTTGCCAATGCAAAATTCATGCTGGATGAAGAG
GAGCACTTCAAGGAGCTCTTGTTTGAGCGCCTTCGTAACTATGGAGAGCGTAATAAGGAGCAGGACTTTTGGCTTGTGATTGAGCCCAAGTTCTTGGACA
AATTCCCTAACATCACCAAAAGACTGAAGAGACCCGCTGTTGCTCTAGTCTCAACTAATGGCACATGGATGACGTTTATGAAATTAAGGTTGGACCGTGT
TCTATCTGATAGCTATGAAGCTGACACTCTAGAAGAAGCATTAGCCTCGAATCCTACCACTATAGAGTTTGAGAAGCCAGAAAACTGGGTGGCACCATAT
CCAAAGTATGAATATGGATGGTGGGAGGCCTTCTTGCCTGCTGAATCAAGAGAATCAAAAGTATAG
AA sequence
>Potri.013G161000.1 pacid=42811208 polypeptide=Potri.013G161000.1.p locus=Potri.013G161000 ID=Potri.013G161000.1.v4.1 annot-version=v4.1
MLSLAVGSSVAAMNKVSIHYTVNYGNGSGKSTATQFGFIKGSQQPPSLLSATTNISSSFKTAVAAVDSNDLTSSPTPPDKQEANKYYFVVANAKFMLDEE
EHFKELLFERLRNYGERNKEQDFWLVIEPKFLDKFPNITKRLKRPAVALVSTNGTWMTFMKLRLDRVLSDSYEADTLEEALASNPTTIEFEKPENWVAPY
PKYEYGWWEAFLPAESRESKV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G58250 EMB3143 EMBRYO DEFECTIVE 3143, unknown... Potri.013G161000
[exp]
0 1
AT1G35680 RPL21C chloroplast ribosomal protein ... Potri.019G083400
[exp]
1.73 0.9768 Pt-RPL21.3
AT1G67280 Glyoxalase/Bleomycin resistanc... Potri.018G042100
[exp]
2.23 0.9673
AT1G78630 EMB1473 embryo defective 1473, Ribosom... Potri.011G106100
[exp]
2.44 0.9660
AT1G52220 unknown protein Potri.001G184700
[exp]
2.44 0.9731
AT4G16410 unknown protein Potri.006G017500
[exp]
5.29 0.9731
AT3G23760 unknown protein Potri.015G108200
[exp]
7.21 0.9709
AT5G06290 2CPB, 2-CysPrxB... 2-CYS PEROXIREDOXIN B, 2-cyste... Potri.006G204900
[exp]
10.00 0.9320 PtrcPrx2cysB,Pt-BAS1.1
AT2G38140 PSRP4 plastid-specific ribosomal pro... Potri.016G113700
[exp]
10.39 0.9635 Pt-PSRP4.1
AT1G06680 PSII-P, OEE2, P... OXYGEN-EVOLVING ENHANCER PROTE... Potri.005G206700
[exp]
10.90 0.9640 OEE2.1
AT1G53520 Chalcone-flavanone isomerase f... Potri.011G101800
[exp]
13.78 0.9326

Potri.013G161000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.