Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31360 310 / 2e-93 MED34, ATRECQ2, RECQL2 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) AT4G35740 303 / 1e-90 ATRECQ3, RECQL3 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) AT1G60930 307 / 4e-89 RECQL4B ,ATRECQ4B RECQ helicase L4B (.1) AT1G10930 303 / 2e-87 ATSGS1, RECQL4A ,ATRECQ4A DNA helicase (RECQl4A) (.1) AT3G05740 270 / 1e-79 RECQI1 RECQ helicase l1 (.1) AT5G27680 177 / 8e-46 RECQSIM RECQ helicase SIM (.1) AT1G27880 176 / 3e-45 DEAD/DEAH box RNA helicase family protein (.1) AT3G06480 80 / 7e-15 DEAD box RNA helicase family protein (.1) AT5G14610 76 / 8e-14 DEAD box RNA helicase family protein (.1.2) AT3G01540 73 / 7e-13 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G015800 [exp] 312 / 1e-90 AT1G10930 1329 / 0.0 DNA helicase (RECQl4A) (.1) Potri.005G107400 [exp] 302 / 6e-90 AT4G35740 850 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Potri.003G104300 [exp] 299 / 4e-89 AT1G31360 986 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Potri.005G019800 [exp] 273 / 2e-80 AT3G05740 828 / 0.0 RECQ helicase l1 (.1) Potri.005G026400 [exp] 181 / 5e-47 AT5G27680 875 / 0.0 RECQ helicase SIM (.1) Potri.010G056500 [exp] 179 / 3e-46 AT1G27880 935 / 0.0 DEAD/DEAH box RNA helicase family protein (.1) Potri.005G000500 [exp] 83 / 5e-16 AT5G26742 885 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.010G152400 [exp] 82 / 1e-15 AT3G06480 801 / 0.0 DEAD box RNA helicase family protein (.1) Potri.005G000100 [exp] 81 / 3e-15 AT5G26742 924 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034434 [exp] 1116 / 0 AT1G31360 280 / 2e-82 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10015467 [exp] 298 / 7e-85 AT1G10930 1288 / 0.0 DNA helicase (RECQl4A) (.1) Lus10033289 [exp] 270 / 4e-78 AT1G31360 949 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10026219 [exp] 267 / 5e-78 AT3G05740 816 / 0.0 RECQ helicase l1 (.1) Lus10042451 [exp] 266 / 6e-78 AT3G05740 814 / 0.0 RECQ helicase l1 (.1) Lus10019128 [exp] 257 / 1e-76 ND / Lus10019129 [exp] 246 / 1e-74 AT5G27680 109 / 9e-27 RECQ helicase SIM (.1) Lus10041840 [exp] 255 / 2e-72 AT4G35740 879 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Lus10034749 [exp] 240 / 7e-68 AT1G31360 853 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10028387 [exp] 200 / 6e-54 AT4G35740 778 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0426 [poplar] [flax] HRDC-like PF00570 [poplar] [flax] HRDC HRDC domain CL0123 [poplar] [flax] HTH PF09382 [poplar] [flax] RQC RQC domain CL0123 [poplar] [flax] HTH PF14493 [poplar] [flax] HTH_40 Helix-turn-helix domain CL0123 [poplar] [flax] PF16124 [poplar] [flax] RecQ_Zn_bind RecQ zinc-binding
Representative CDS sequence Show only first row Show all	>Potri.013G161200.1 pacid=42811747 polypeptide=Potri.013G161200.1.p locus=Potri.013G161200 ID=Potri.013G161200.1.v4.1 annot-version=v4.1 ATGCTATCCACACTCAAGCAATACTTTGGGTATGCGAATTTCAGGGCTTACCAGAAGGAGGTGATCGACCAGATTCTGGACAAGAGGGACTGTTTAGCGG TCATGGCCACTGGCAGCGGAAAGTCTTTATGCTACCAGGTTCCTCCTTTGCTTCTTGAAAAGACTGCCGTAGTCATAAGCCCCCTTATTTCTTTGATGCA AGATCAGGTTATGAGTTTGAAACAACGCGGAATCAGAGCTGAGTTTCTTGGAAGTGCTCAGACTGATGGTTCCGTCCATACCAAAGCTCAGACTGGTCAT TTTCATTTATTGTTCATGACACCTGAAAAGGCTTGCTCCACCCCTCTCAGCTTCTGGTTGAAATTGCTAGAGGCAGGAATTTGTCTCTTTGCTGTTGATG AAGCTCATTGCATCTCAGAGTGGGGCCATGATTTCAGGGTGGAATACAAGCAGTTATACAAGTTACGTGATGTTCTTTTGGAAGTTCCATTTGTTGCATT AACTGCAACTGCTACTGAAAAGGTTAGAATTGACATCATCAATTCTTTGAAGATGAACAATCCTTATGTTGCTGTTGGCTCATTTGATCGTAAAAATCTC TTCTACGGTGTCAAACATTTCAATCGCAGTCTTCAATTTGTGGATGAGCTTGTGCAAGAAATATCAAAATATGCAAGGAAGGCCGGGTCAACTATTATTT ACTGTACAACAATAAAAGATGTTGAGCAGATTCACAAGTCACTGAAAGAGGCAGGAATTAAGACTGGAATATATCATGGTCAAATGAGCAGCAAAGCTCG TGAGGAGTCCCACAGATCGTTTGTAAGAGATGAACTGCTGGTCATGGTTGCTACTATTGCCTTTGGCATGGGCATTGATAAGCCAAACATAAGGCAAGTG ATACATTATGGTTGTCCAAAGAGTATAGAATCTTATTATCAGGAAAGTGGGCGATGTGGGAGAGATGGTATTCCTTCTGTCTGTTGGCTATATTATACAA GAGCTGACTTTGCAAAAGCTGACTTCTATTGTGGAGGATTAAGAACAGAAAATCAAAGAAGGGCTGTTATGGAGTCATTGATGGCTGCGCAACACTACTG CTCACTAACCACATGCAGAAGAAAGTTCTTGCTCAGTTATTTCGGGGAAAAATTTTCAGCTGAGAAATGTGGAAATTGTGATAACTGCATGGTCTCAAAG AGGGAGCGTGACATGTCCAAGGAATCATTTCTTTTAATGTCTTGCATTCAATCGTGTGAGGGTAACTGGGGCCTCAATATGCCTGTAGATGTTCTTCGTG GATCCAGGGCAAAAAAAATTCTTAATGCTCATTTTGACAAGCTACCATTTCATGGACTTGGGAAAGACTACTCGTCAAATTGGTGGAAATCACTGGCTTA CCAATTAATTTCTCACGGTTATCTGATGGAGACTTTTAGAGATACATATAAATTTGTAAGAGTAAGTCCAAAAGGGAAGCAATATATTCAGTCTGCTAGA CCTGATCACCAACCAGCTCTAATATTACCATTGACTGATGAAATGGTTGAGGATGAAGAACAACAATGCACAACAGGCGGGGTTGGAGAGTTGAATAGTA TGGCAACTTTAGAATGTGAACAATTGTCAGAGGCTGAAGCACGAATCTTTCACATGCTTTTGGATGAGAGAACCAAGCTTGCTAAAAGCATTGGGACTGC TCCATATGCTGTATGTGGTGATCAAACAATAAAAAAAATTGCTTTGGTGAGACCATCTACCAAAGCAAGGTTGGCAAACATTGATGGTGTCAACCAGCAT CTTGTTGTGAGACATGGCGATTATCTTCTTCAAACTATTAGGGATCTGTCACAAGAACTTAACCTTTCCTTGGACGGGGGAGCAAACTTGCAGACTGCTA ATACGAGAAAAGCCAATCAAGTACCAAATCACAAGAAATTAACCCCAGCTAAGTTAGATGCTTGGAAAATGTGGCATGAAAATGGTCTACCAATTCAAAA AATCGCGAATTTCCCTGGTAGATCAGCTCCTATAAAAGAAGGATCTGTAGTTGAATATCTTCTAGAAGCTGCACAAGGAGGACTCCAGATTGAATGGACT AGATTGTGTGGTGAAGTTGGACTTTCACGTGAAAGATTGTCAGAAATTGAGGGTGCAATCTCAAAGGTTGGCTCTAGGGAAAAGTTGAAGCCCATTAAAG ATGAATTACCAGAAGATATAAGCTACGCACACATCAAGATCTGTCTGGCAATGCAAAACTGTGGGTTTTTACCTGAAGTGACTCCACCTAGCCACCTTGA CACATCGAAGGCTGATGAATTTGTGGAAAGTGAGTCTGGAATGGTTTCTACTGGTACCAGCTGCTTGGACACGGTTCATGAGGTTGAAATATCAGTCAAG ATTATGGCTACTCATTGTTGCTCAGATCATAATGAAGAAACTTCCTCCCTTATGGTCAGAATTGCACAGGACCAAGAGGTTCATCCTATCAATGATGCAA ATGTACTTTCCCCAAGGAAACGTCAGAAGGTAGATATACCTGAAGAAAGCACAACTGCATTGGAAGCTACGGAGAGTTCCATACTGGATTGGCTCAAGAA CTATGATGAAGGGGTTTTCATTAGAGATATTTTGGAGCATTTCAACGGGTCAAAAGAGGAATTGGTGATTGATTTACTAAGTAGCCTTGAAAGCGACTTC GTAATATTTAAGAAGAATGATCTGTATATGCTTTTGTAA
AA sequence Show only first row Show all	>Potri.013G161200.1 pacid=42811747 polypeptide=Potri.013G161200.1.p locus=Potri.013G161200 ID=Potri.013G161200.1.v4.1 annot-version=v4.1 MLSTLKQYFGYANFRAYQKEVIDQILDKRDCLAVMATGSGKSLCYQVPPLLLEKTAVVISPLISLMQDQVMSLKQRGIRAEFLGSAQTDGSVHTKAQTGH FHLLFMTPEKACSTPLSFWLKLLEAGICLFAVDEAHCISEWGHDFRVEYKQLYKLRDVLLEVPFVALTATATEKVRIDIINSLKMNNPYVAVGSFDRKNL FYGVKHFNRSLQFVDELVQEISKYARKAGSTIIYCTTIKDVEQIHKSLKEAGIKTGIYHGQMSSKAREESHRSFVRDELLVMVATIAFGMGIDKPNIRQV IHYGCPKSIESYYQESGRCGRDGIPSVCWLYYTRADFAKADFYCGGLRTENQRRAVMESLMAAQHYCSLTTCRRKFLLSYFGEKFSAEKCGNCDNCMVSK RERDMSKESFLLMSCIQSCEGNWGLNMPVDVLRGSRAKKILNAHFDKLPFHGLGKDYSSNWWKSLAYQLISHGYLMETFRDTYKFVRVSPKGKQYIQSAR PDHQPALILPLTDEMVEDEEQQCTTGGVGELNSMATLECEQLSEAEARIFHMLLDERTKLAKSIGTAPYAVCGDQTIKKIALVRPSTKARLANIDGVNQH LVVRHGDYLLQTIRDLSQELNLSLDGGANLQTANTRKANQVPNHKKLTPAKLDAWKMWHENGLPIQKIANFPGRSAPIKEGSVVEYLLEAAQGGLQIEWT RLCGEVGLSRERLSEIEGAISKVGSREKLKPIKDELPEDISYAHIKICLAMQNCGFLPEVTPPSHLDTSKADEFVESESGMVSTGTSCLDTVHEVEISVK IMATHCCSDHNEETSSLMVRIAQDQEVHPINDANVLSPRKRQKVDIPEESTTALEATESSILDWLKNYDEGVFIRDILEHFNGSKEELVIDLLSSLESDF VIFKKNDLYMLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G31360		MED34, ATRECQ2,...	ARABIDOPSIS THALIANA RECQ 2, ...		Potri.013G161200 [exp]	0	1
AT4G14950		KMS1	Killing Me Slowly 1, SNARE ass...		Potri.013G021700 [exp]	2.00	0.6760
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Potri.014G194300 [exp]	2.44	0.6798
AT4G03130			BRCT domain-containing DNA rep...		Potri.014G135520 [exp]	3.16	0.6696
AT4G17150			alpha/beta-Hydrolases superfam...		Potri.006G000700 [exp]	6.24	0.6904
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Potri.007G026700 [exp]	12.16	0.6901	CHR904,SOM1.2
AT1G76630			Tetratricopeptide repeat (TPR)...		Potri.002G001700 [exp]	20.17	0.6493
AT1G08260		ESD7, EMB142, E...	TILTED 1, EARLY IN SHORT DAYS ...		Potri.004G185700 [exp]	29.59	0.6653
AT3G13170		ATSPO11-1	Spo11/DNA topoisomerase VI, su...		Potri.001G366700 [exp]	34.64	0.6308
AT2G41550			Rho termination factor (.1)		Potri.006G046700 [exp]	41.95	0.6411
AT5G22850			Eukaryotic aspartyl protease f...		Potri.001G213600 [exp]	48.49	0.6251

Compare expression of checked genes

Potri.013G161200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.