Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10860 343 / 6e-122 CBSX3 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) AT1G47271 181 / 3e-58 Cystathionine beta-synthase (CBS) family protein (.1) AT3G52950 59 / 3e-10 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) AT2G36500 57 / 1e-09 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) AT5G63490 57 / 2e-09 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) AT5G50530 55 / 7e-09 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) AT5G50640 55 / 7e-09 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) AT1G69800 45 / 2e-05 Cystathionine beta-synthase (CBS) protein (.1), Cystathionine beta-synthase (CBS) protein (.2) AT4G34120 43 / 6e-05 CBSX2, CDCP1, LEJ1 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G000100 [exp] 376 / 1e-134 AT5G10860 339 / 2e-120 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Potri.005G228300 [exp] 223 / 3e-74 AT1G47271 251 / 1e-85 Cystathionine beta-synthase (CBS) family protein (.1) Potri.002G034800 [exp] 90 / 5e-23 AT1G47271 102 / 4e-28 Cystathionine beta-synthase (CBS) family protein (.1) Potri.005G070500 [exp] 58 / 6e-10 AT3G52950 750 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) Potri.007G098400 [exp] 53 / 4e-08 AT3G52950 728 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) Potri.012G099600 [exp] 52 / 1e-07 AT5G50530 639 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) Potri.015G098100 [exp] 51 / 1e-07 AT5G50530 628 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) Potri.005G140800 [exp] 42 / 0.0002 AT4G36910 300 / 6e-104 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 2, CBS domain containing protein 1, Cystathionine beta-synthase (CBS) family protein (.1) Potri.001G303900 [exp] 41 / 0.0003 AT4G34120 267 / 1e-90 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019117 [exp] 352 / 3e-125 AT5G10860 347 / 2e-123 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Lus10034441 [exp] 355 / 2e-122 AT5G10860 350 / 4e-120 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Lus10035014 [exp] 335 / 2e-118 AT5G10860 341 / 5e-121 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Lus10021675 [exp] 334 / 5e-118 AT5G10860 338 / 7e-120 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Lus10001964 [exp] 189 / 2e-60 AT1G47271 202 / 5e-66 Cystathionine beta-synthase (CBS) family protein (.1) Lus10035965 [exp] 52 / 6e-08 AT3G52950 714 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) Lus10025698 [exp] 52 / 1e-07 AT3G52950 728 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) Lus10043123 [exp] 52 / 1e-07 AT5G50530 714 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) Lus10032625 [exp] 52 / 1e-07 AT5G50530 721 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) Lus10002834 [exp] 49 / 6e-07 AT4G34120 260 / 2e-87 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [poplar] [flax] CBS CBS domain
Representative CDS sequence Show only first row Show all	>Potri.013G161500.2 pacid=42811035 polypeptide=Potri.013G161500.2.p locus=Potri.013G161500 ID=Potri.013G161500.2.v4.1 annot-version=v4.1 ATGCAAGGGGCACTTCGTGCATGTTTAACCCATGGAAATGTTGTCAAAGATTCACTCTTGCAACATGTCCGTGTTTTGAGTCCACTCTTGCGGCCCATTG TGTTTTCTCGTTTTGAATCAGTCTCATCTGCTCGTATAGAAGAGCATGGCTTTGAGAGCACCAGAATTGCTGACATCCTCAAAGAGAAAGGTAAAGGTGC AGATGGCTCGTGGCTTTGGTGCACTACGGATGACACTGTTTATGATGCTGTCAAGTCGATGACACAGCACAACGTTGGAGCCTTGGTTGTTGTCAAACCT GGAGAGCAGAAATCAATTGCAGGAATCATCACAGAGAGAGACTATCTGCGGAAGATCATTGTGCAGGGAAGATCATCCAAGTCAACCAAGGTTGGGGACA TCATGACTGAAGAGAACAAGCTCATCACTGTCACGCCAGATACCAAAGTTCTGAAGGCTATGCAATTGATGACAGATAAACGCATCAGGCACATTCCTGT GATTGATGATAAGGAAATGATTGGCATGGTATCAATTGGAGATGTTGTCCGTGCTGTGGTGAGTGAGCACCGGGAGGAGGTGGACCGCCTGAATGCTTAC ATACAAGGAGGTTACTGA
AA sequence Show only first row Show all	>Potri.013G161500.2 pacid=42811035 polypeptide=Potri.013G161500.2.p locus=Potri.013G161500 ID=Potri.013G161500.2.v4.1 annot-version=v4.1 MQGALRACLTHGNVVKDSLLQHVRVLSPLLRPIVFSRFESVSSARIEEHGFESTRIADILKEKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKP GEQKSIAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVTPDTKVLKAMQLMTDKRIRHIPVIDDKEMIGMVSIGDVVRAVVSEHREEVDRLNAY IQGGY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10860		CBSX3	CBS domain containing protein ...		Potri.013G161500 [exp]	0	1
AT4G33580		ATBCA5	A. THALIANA BETA CARBONIC ANHY...		Potri.017G044700 [exp]	1.00	0.7895
AT3G60640		ATG8G	AUTOPHAGY 8G, Ubiquitin-like s...		Potri.002G144600 [exp]	4.47	0.6871
AT3G05700			Drought-responsive family prot...		Potri.005G020900 [exp]	4.69	0.7490
AT1G27290			unknown protein		Potri.003G170300 [exp]	8.94	0.6145
AT2G05830			NagB/RpiA/CoA transferase-like...		Potri.006G219900 [exp]	9.79	0.6814
AT5G65940		CHY1	beta-hydroxyisobutyryl-CoA hyd...		Potri.014G179000 [exp]	10.39	0.7236	CHY1.1
					Potri.015G106700 [exp]	12.84	0.6830
AT4G39235			unknown protein		Potri.002G057100 [exp]	12.96	0.6800
AT3G24200			FAD/NAD(P)-binding oxidoreduct...		Potri.001G051200 [exp]	17.32	0.6455
AT5G54540			Uncharacterised conserved prot...		Potri.011G130000 [exp]	22.44	0.6415

Compare expression of checked genes

Potri.013G161500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.