Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20350 295 / 3e-101 oxidoreductases (.1.2) AT1G31600 53 / 6e-08 AtTRM9 Arabidopsis thaliana tRNA methyltransferase 9, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G106300 [exp] 58 / 1e-09 AT1G31600 450 / 2e-159 Arabidopsis thaliana tRNA methyltransferase 9, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003687 [exp] 356 / 3e-125 AT4G20350 294 / 4e-101 oxidoreductases (.1.2) Lus10028991 [exp] 344 / 1e-120 AT4G20350 283 / 5e-97 oxidoreductases (.1.2) Lus10037263 [exp] 56 / 6e-09 AT1G31600 459 / 4e-162 Arabidopsis thaliana tRNA methyltransferase 9, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF13532 [poplar] [flax] 2OG-FeII_Oxy_2 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Potri.013G161600.6 pacid=42811656 polypeptide=Potri.013G161600.6.p locus=Potri.013G161600 ID=Potri.013G161600.6.v4.1 annot-version=v4.1 ATGGAAGGAAATTTGAATGAATTTCTAGTAGGGCAGCTGCCAACTGTCATCTACACTCCTCATTTTATCACACAGACTGAAGAAACCCATCTTCTACAAA AGATTTATGAAGCCCCTTTATCAAAGTGGAAATCTTTGAAGAACAGAAGACTTCAGAATTGGGGTGGTGTCGTCCACGAAAAAGGACTTCTACCCCAAGA CTTGCCTCCCTGGTTAACGATGATTACACAAAGAATATCAGAAGAATCAGGGCTGTTCCCCTCAGCAATCAATCACGTTCTCATCAATGAATACCTTCCT GACCAGGGAATAATGCCCCACCAGGATGGACCTGCATATTTTCCTGTAGTAGCTATACTTTCTCTTGGATCGCCTGTTGTCATGGATTTCACTCCACATT CACGGTTAAGAACATGCACAGACACGTGGAAAAATGAAGTTGATGAACAAAATTTTGGTCGAGAAGCTAAAGAGACTGAGACAGAACAGATGGATAATCC TGAAACTTCAGTTCTATTGATGCCTCAGAGTCTACTTATATTCAAGGACAATGCCTACTCAGACTACTTGCATGGCATAAAAGATAGCGAGGTTCATCAT TGTGATAAGGCCATAAATGAAGTTGAAGCTCTTGCACATGATAAACTCAATGAACCCTCCTTTGGCACTGAGAGTGCTGCTGTTCAAGATGTGGGAAGTG GAGATCGCAATGCCATCCATCGGACAGCAAAAAGAATTTCATTGACTTGTCGAGTAGTGTTGAAGGTTCACAAGAATATATTCAAGTTTTAA
AA sequence Show only first row Show all	>Potri.013G161600.6 pacid=42811656 polypeptide=Potri.013G161600.6.p locus=Potri.013G161600 ID=Potri.013G161600.6.v4.1 annot-version=v4.1 MEGNLNEFLVGQLPTVIYTPHFITQTEETHLLQKIYEAPLSKWKSLKNRRLQNWGGVVHEKGLLPQDLPPWLTMITQRISEESGLFPSAINHVLINEYLP DQGIMPHQDGPAYFPVVAILSLGSPVVMDFTPHSRLRTCTDTWKNEVDEQNFGREAKETETEQMDNPETSVLLMPQSLLIFKDNAYSDYLHGIKDSEVHH CDKAINEVEALAHDKLNEPSFGTESAAVQDVGSGDRNAIHRTAKRISLTCRVVLKVHKNIFKF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20350			oxidoreductases (.1.2)		Potri.013G161600 [exp]	0	1
AT2G44970			alpha/beta-Hydrolases superfam...		Potri.018G085600 [exp]	4.24	0.8823
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Potri.003G216651 [exp]	7.41	0.8828
AT5G03860		MLS	malate synthase (.1.2)		Potri.012G094532 [exp]	10.95	0.8572
AT5G03860		MLS	malate synthase (.1.2)		Potri.015G092000 [exp]	20.85	0.8338
AT1G27170			transmembrane receptors;ATP bi...		Potri.011G012801 [exp]	20.97	0.8631
AT3G07350			Protein of unknown function (D...		Potri.004G184700 [exp]	24.16	0.7795
AT4G10780			LRR and NB-ARC domains-contain...		Potri.017G035300 [exp]	28.19	0.8594
AT4G25550			Cleavage/polyadenylation speci...		Potri.012G140301 [exp]	30.00	0.8553
AT4G04880			adenosine/AMP deaminase family...		Potri.011G000100 [exp]	30.85	0.8342
AT5G16970		AT-AER	alkenal reductase (.1)		Potri.017G004032 [exp]	32.31	0.7977

Compare expression of checked genes

Potri.013G161600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.