Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-DET1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10180 774 / 0 FUS2, DET1, ATDET1 FUSCA 2, DE-ETIOLATED 1, light-mediated development protein 1 / deetiolated1 (DET1) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032487 [exp] 824 / 0 AT4G10180 692 / 0.0 FUSCA 2, DE-ETIOLATED 1, light-mediated development protein 1 / deetiolated1 (DET1) (.1) Lus10042983 [exp] 624 / 0 AT4G10180 537 / 0.0 FUSCA 2, DE-ETIOLATED 1, light-mediated development protein 1 / deetiolated1 (DET1) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09737 [poplar] [flax] Det1 De-etiolated protein 1 Det1
Representative CDS sequence Show only first row Show all	>Potri.013G161700.1 pacid=42811958 polypeptide=Potri.013G161700.1.p locus=Potri.013G161700 ID=Potri.013G161700.1.v4.1 annot-version=v4.1 ATGTTGAGGAACAACAATGTGGTTGCCAGGATTTTTCAGCGCCAAATCCAAACTCCTCCTCCTGGAACCAGCGTTCATTGTGCTCGGCGATTCTATGAGA ATTTAGTGCCTAGTTTTACCATATATGATGTTGAATGCCCCGATCATTCATTCCGCAAATTCACCGATGATGGTCAATACCTCATTAGTTTTAGCAGAAA TCACCAGGATCTCATTGTTTATAGACCCACTTGGCTCTCCTATTCCTACAAACAAGAAGATTGTCATCTTCCATCTAGAGCTAAGAGGTTCGACAGCTTC TTCACTCAACTCTACTGTGTCCCCCTTGCTTCCAGCAATGAGGTTATTTGCAAAGATTTCTTTCTATATGTCATCACCAACCAGTTCGGACTCTTTGCTA CTTCCACTGCTCAAATTCATGATGCACCTGCTATAGGAGGAGCTATTCAAGGAGTCCCTTCCATAGAAAGAATTACTTTTCACCTCTTGAGGTTGGAAGA TGGGGTGATACTAGATGAGAAGGTCTTTCGCAATGATTTTATTAACTTGGCTCATAACATGGGTGTCTTCCTGTATGATGATTTACTGGCCGTTGTGTCG CTTCGCTATCAGACAATATACATTCTCCAAATTAGGGAATCTGGTAACCTTGTTGATGTGCGTGCGATAGGTGCATTTTGTCGTGAAGATGATGAACTTT TTCTTAATTCTAACAGTCAGTGCATGGCAGTGGCTGACAGAAGTAAACTGCATCAATCATCTGGGAATCATGTCGATAATGGTGTCCATAGTAATCAGCT GAATTCAGACAATTCTTTTCTTTGTGGCATTAAACAACGCTTGCTCTCATTCATTTTTCAAGGAATATGGAGTGAAGAAACTGATAAATTCCAGAGGGTC CAGTGCTTGAAGAAGAAATTCTATTTCCATTTTCAAGATTATGTCGACTTGATTATTTGGAAGGTACAATTCTTGGATCGTCATCATTTGCTAATCAAGT TTGGGAGTGTTGATGGAGGGCTTCAGGTATCACGAAGTGCTGATCACCATGCATCATTCTTTGCTGTATATAACATGGAGACAACTGAAATCGTTGCGTT TTACCAGAATTCAGCAGATGAGCTTTATCTCCTGTTTGAGCAGTTCTGCGACCACTTCTATGCTATGTCAAGAAATTCATCTTACATGAATTTCATATCA TCACACTCAAATAACATCCATGCTCTTGAGCAACTACGGTCCATCAAGTATAAAGCCAGCAGTCTTTCACAGTTTGTGAAGAAGATGCTGACATCTTTAC CTTTCAGTTGTCAATCACTGAGTCCTTCACCCTATTTTGATCAATCTCTCTTTCGGTACGATGAAAAGCTGATATCTGCGACTGACCGGCATAGACCATC GACAGATCATCCTATCAAGTTCATTTCTAGAAGGCAACCACATACCCTAAAATTTAAGATTAAGCCAGGTCCTGAAGCTGGAAGTTTAGATGGTCGAACA AAAAAGGTGTCGTCATTCCTGTTCCATCCTTTTTTACCCCTGGCTCTTTCCATTCAGCAGACGCTGTTCTTGCAACCATCAGTGAATATTCACTTTCGAG GGTGA
AA sequence Show only first row Show all	>Potri.013G161700.1 pacid=42811958 polypeptide=Potri.013G161700.1.p locus=Potri.013G161700 ID=Potri.013G161700.1.v4.1 annot-version=v4.1 MLRNNNVVARIFQRQIQTPPPGTSVHCARRFYENLVPSFTIYDVECPDHSFRKFTDDGQYLISFSRNHQDLIVYRPTWLSYSYKQEDCHLPSRAKRFDSF FTQLYCVPLASSNEVICKDFFLYVITNQFGLFATSTAQIHDAPAIGGAIQGVPSIERITFHLLRLEDGVILDEKVFRNDFINLAHNMGVFLYDDLLAVVS LRYQTIYILQIRESGNLVDVRAIGAFCREDDELFLNSNSQCMAVADRSKLHQSSGNHVDNGVHSNQLNSDNSFLCGIKQRLLSFIFQGIWSEETDKFQRV QCLKKKFYFHFQDYVDLIIWKVQFLDRHHLLIKFGSVDGGLQVSRSADHHASFFAVYNMETTEIVAFYQNSADELYLLFEQFCDHFYAMSRNSSYMNFIS SHSNNIHALEQLRSIKYKASSLSQFVKKMLTSLPFSCQSLSPSPYFDQSLFRYDEKLISATDRHRPSTDHPIKFISRRQPHTLKFKIKPGPEAGSLDGRT KKVSSFLFHPFLPLALSIQQTLFLQPSVNIHFRG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10180		FUS2, DET1, ATD...	FUSCA 2, DE-ETIOLATED 1, light...		Potri.013G161700 [exp]	0	1	Pt-DET1.1
AT4G14880		OLD3, CYTACS1, ...	ONSET OF LEAF DEATH 3, O-acety...		Potri.013G035200 [exp]	1.41	0.9088
AT4G31040			CemA-like proton extrusion pro...		Potri.006G080100 [exp]	2.00	0.9089
AT2G42620		PPS, PP2, ORE9,...	PLEIOTROPIC PHOTOSIGNALING, OR...		Potri.011G066700 [exp]	3.31	0.8536
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Potri.005G192000 [exp]	3.87	0.8936
AT5G48960			HAD-superfamily hydrolase, sub...		Potri.008G205900 [exp]	4.47	0.8718
AT5G06100	MYB	ATMYB33	myb domain protein 33 (.1.2.3)		Potri.001G036000 [exp]	5.91	0.8131
AT1G68750		ATPPC4	phosphoenolpyruvate carboxylas...		Potri.008G114200 [exp]	8.36	0.7934
AT4G34020		AtDJ1C	DJ-1 homolog C, Class I glutam...		Potri.009G100900 [exp]	10.00	0.8858
AT1G23180			ARM repeat superfamily protein...		Potri.010G110200 [exp]	10.00	0.8568
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.013G154300 [exp]	10.67	0.8708

Compare expression of checked genes

Potri.013G161700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.