Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description ATCG00540 592 / 0 ATCG00540.1, PETA photosynthetic electron transfer A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G094201 [exp] 560 / 0 ATCG00540 508 / 0.0 photosynthetic electron transfer A (.1)
Flax homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0105 [poplar] [flax] Hybrid PF01333 [poplar] [flax] Apocytochr_F_C Apocytochrome F, C-terminal CL0105 [poplar] [flax] PF16639 [poplar] [flax] Apocytochr_F_N Apocytochrome F, N-terminal
Representative CDS sequence Show only first row Show all	>Potri.013G162200.1 pacid=42812748 polypeptide=Potri.013G162200.1.p locus=Potri.013G162200 ID=Potri.013G162200.1.v4.1 annot-version=v4.1 ATGCAAACTAGAAAGACCCTCTCTTGGATAAAGGAAGAGATTACTCGCTCCATTTCCGTATCGCTCATGATATATATAATAACTGGGGCATACATTTCAA ATGCATATCCCATTTTTGCACAGCAGGGTTATGAAAATCCGCGCGAAGCAACTGGTCGTATTGTATGCGCGAATTGTCATTTAGCTAATAAGCCCGTGGG TATTGAGGTTCCACAAGCGGTACTTCCTGATACTGTATTTGAAGCAGTTGTTCGAATTCCTTATGATATGCAACTAAAACAAGTTCTTGCTAATGGTAAA AAGGGAGCTTTGAATGTGGGGGCTGTTCTTATTTTACCTGAGGGGTTTGAATTAGCCCCTCCTGATCGTATTTCGCCAGAGATGAAAGAAAAGATAGGTA ATCTCTCTTTTCAGAGTTATCGCCCCGCTAAAAAAAATATTCTTGTGATAGGTCCCGTTCCTGGTCAAAAATATAGTGAAATCACCTTTCCTATTCTTTC TCCGGACCCTGCTGCTAAGAAGGATGCTCACTTCTTAAAATATCCCATATACGTAGGCGGGAACAGGGGAAGGGGTCAGATTTATCCCGACGGGAGCAAG AGTAACAATACGGTTTATAATGCTACAGCAGCGGGTATAGTAAGCAAAATCATACGAAAAGAAAAAGGGGGGTACGAAATAACTATAACAGATGCGCCAG AGGGGCGTCAAGTGATTGATAGTATCCCCCCAGGACCAGAACTTCTTGTTTCAGAAGGCGAATCCATCAAACTCGATCAACCATTAACAAGTAATCCTAA TGTGGGCGGATTTGGTCAGGGAGACGCAGAAATAGTACTTCAAGACCCATTACGTGTCCAAGGCCTTTTGTTCTTCTTGGCATCCGTTATTTTGGCACAA ATCTTTTTGGTTCTTAAAAAGAAACAGTTTGAGAAGGTTCAATTGTCCGAAATGAATTTCTAG
AA sequence Show only first row Show all	>Potri.013G162200.1 pacid=42812748 polypeptide=Potri.013G162200.1.p locus=Potri.013G162200 ID=Potri.013G162200.1.v4.1 annot-version=v4.1 MQTRKTLSWIKEEITRSISVSLMIYIITGAYISNAYPIFAQQGYENPREATGRIVCANCHLANKPVGIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGK KGALNVGAVLILPEGFELAPPDRISPEMKEKIGNLSFQSYRPAKKNILVIGPVPGQKYSEITFPILSPDPAAKKDAHFLKYPIYVGGNRGRGQIYPDGSK SNNTVYNATAAGIVSKIIRKEKGGYEITITDAPEGRQVIDSIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLLFFLASVILAQ IFLVLKKKQFEKVQLSEMNF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
ATCG00540		ATCG00540.1, PE...	photosynthetic electron transf...		Potri.013G162200 [exp]	0	1
ATCG00540		ATCG00540.1, PE...	photosynthetic electron transf...		Potri.016G094201 [exp]	1.41	0.9161
ATMG01190		ATMG01190.1, AT...	ATP synthase subunit 1 (.1)		Potri.007G062242 [exp]	14.07	0.7702
					Potri.013G066640 [exp]	19.07	0.7823
AT3G02340			RING/U-box superfamily protein...		Potri.001G185200 [exp]	19.49	0.8130
					Potri.005G033300 [exp]	20.00	0.7929
AT3G59300			Pentatricopeptide repeat (PPR)...		Potri.002G230700 [exp]	20.24	0.8551
AT2G03500	GARP		Homeodomain-like superfamily p...		Potri.009G106600 [exp]	22.00	0.7031
					Potri.013G092500 [exp]	23.36	0.7236
AT3G49940	AS2	LBD38	LOB domain-containing protein ...		Potri.002G119400 [exp]	25.47	0.8072
AT5G56140			RNA-binding KH domain-containi...		Potri.011G168000 [exp]	32.40	0.7131

Compare expression of checked genes

Potri.013G162200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.