Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description ATCG00530 338 / 3e-119 ATCG00530.1, YCF10 CemA-like proton extrusion protein-related (.1) AT4G31040 70 / 1e-13 CemA-like proton extrusion protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G094100 [exp] 411 / 5e-148 ATCG00530 333 / 5e-117 CemA-like proton extrusion protein-related (.1) Potri.018G150000 [exp] 73 / 7e-15 AT4G31040 511 / 2e-180 CemA-like proton extrusion protein-related (.1) Potri.006G080100 [exp] 68 / 4e-13 AT4G31040 497 / 5e-175 CemA-like proton extrusion protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021616 [exp] 67 / 8e-13 AT4G31040 494 / 3e-174 CemA-like proton extrusion protein-related (.1) Lus10040575 [exp] 64 / 2e-11 AT4G31040 494 / 1e-172 CemA-like proton extrusion protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03040 [poplar] [flax] CemA CemA family
Representative CDS sequence Show only first row Show all	>Potri.013G162300.1 pacid=42812724 polypeptide=Potri.013G162300.1.p locus=Potri.013G162300 ID=Potri.013G162300.1.v4.1 annot-version=v4.1 ATGGAAAAAAAAGCATTCATTCCCCTTCTATATCTTACGTCTATAGTATTTTTGCCCTGGTGGGTCTCTTTTTCATTTAATAAAAGTCTGGGATCTTGGA TTATTAATTGGTGGAATACTAGTAAATCCGAAACTTTTTTAAATGATATTCAAGAAAAGAGTATTCTAGAAAAATTAATAGAATTTGAGGAACTCTTCCT GTTGGACGAAATGATAAAGGAATACCCCGAAACACATCTACAAAAGTTTCGTATCGGAATCCACAAAGAAACGATCCAATTGATCAAGATGCACAACGCA GATCGTATAGATACGATTTTGCACTTCTCGACAAATATAATCTGTTTCGTTATTCTAAGTGGTTATTCTTTTTTAGTTAATGAAGAACTTTTTATTCTTA ATTCTTGGGTTCAAGAATTCATATATAACTTAAGCGACACGATAAAAGCCCTTTCTATTCTTTTATTAACCGACTTATGTATAGGATTCCATTCACCCCA CGGTTGGGAACTAATGATTAGCTCTTTCTACAAGGATTTTGGATTTGCTCATAATGATCAAATTATATCTGGACTTGTTTCCACCTTTCCAGTAATTTTC GATACAATTTTTAAATATTGGATCTTCCGTTATTTAAATCGTGTATCTCCGTCACTTGTAGTGATTTATCATTCAATGAATGACTGA
AA sequence Show only first row Show all	>Potri.013G162300.1 pacid=42812724 polypeptide=Potri.013G162300.1.p locus=Potri.013G162300 ID=Potri.013G162300.1.v4.1 annot-version=v4.1 MEKKAFIPLLYLTSIVFLPWWVSFSFNKSLGSWIINWWNTSKSETFLNDIQEKSILEKLIEFEELFLLDEMIKEYPETHLQKFRIGIHKETIQLIKMHNA DRIDTILHFSTNIICFVILSGYSFLVNEELFILNSWVQEFIYNLSDTIKALSILLLTDLCIGFHSPHGWELMISSFYKDFGFAHNDQIISGLVSTFPVIF DTIFKYWIFRYLNRVSPSLVVIYHSMND

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
ATCG00530		ATCG00530.1, YC...	CemA-like proton extrusion pro...		Potri.013G162300 [exp]	0	1
ATCG00520		ATCG00520.1, YC...	unfolded protein binding (.1)		Potri.013G162400 [exp]	2.00	0.9824
ATCG00530		ATCG00530.1, YC...	CemA-like proton extrusion pro...		Potri.016G094100 [exp]	4.24	0.9650
ATCG00270		ATCG00270.1, PS...	photosystem II reaction center...		Potri.019G047540 [exp]	4.89	0.9371
ATCG00510		ATCG00510.1, PS...	photsystem I subunit I (.1)		Potri.013G162500 [exp]	4.89	0.9549
ATCG00570		ATCG00570.1, PS...	photosystem II reaction center...		Potri.013G162000 [exp]	5.29	0.9527
ATCG00270		ATCG00270.1, PS...	photosystem II reaction center...		Potri.008G207200 [exp]	5.47	0.9432
ATCG00520		ATCG00520.1, YC...	unfolded protein binding (.1)		Potri.016G094067 [exp]	5.91	0.9609
ATCG00480		ATCG00480.1, AT...	ATP synthase subunit beta (.1)		Potri.013G162800 [exp]	6.32	0.9614
ATCG00580		ATCG00580.1, PS...	photosystem II reaction center...		Potri.013G161900 [exp]	6.32	0.9523
ATCG00380		ATCG00380.1, RP...	chloroplast ribosomal protein ...		Potri.013G163300 [exp]	6.63	0.9396

Compare expression of checked genes

Potri.013G162300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.