Plant FIBer expression Database

Potri.013G162600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
ATCG00500 592 / 0 ATCG00500.1, ACCD acetyl-CoA carboxylase carboxyl transferase subunit beta (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G150200
[exp]
225 / 4e-72 ATCG00500 186 / 9e-58 acetyl-CoA carboxylase carboxyl transferase subunit beta (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002473
[exp]
329 / 1e-109 ATCG00500 312 / 1e-103 acetyl-CoA carboxylase carboxyl transferase subunit beta (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0127 ClpP_crotonase PF01039 Carboxyl_trans Carboxyl transferase domain
Representative CDS sequence
>Potri.013G162600.1 pacid=42812158 polypeptide=Potri.013G162600.1.p locus=Potri.013G162600 ID=Potri.013G162600.1.v4.1 annot-version=v4.1
ATGAAAAAATGTTGGTTCCATTCGATGTTATCCAATGTGGAGTTAGAATACAGGTGTAGGCTAAGTAAATCAATGGATAATCTTGGTCCTCTTGAAAATA
CCAGTGTAAGTGAAGACCCGATTCTAAATGATACAGAAAAAAACACCTATAATTGGAGTCATAGTGACAGTAGTAATGTTGATCATTTAGTCGGCGTTAG
GGACATTCGGAATTTAAACGTGGATGACACTTTTTTAGTTTTAGGTAGGGATAATAAAAAAGACGGTTATTCCATATATTTTGATATTGAAAATCAAGTT
TTTGGGATTGACAATAATCATTCTTTTTTGAGTAAATTAGAAAAAGAATTTTCTAGTTATTGGAATTCTAGTTATTTAAATAAGGGGTCTAGGAGTGACG
ATTCCCACTATGATTATTCTATGTATGATAATAAATATAGTTGGAATAATTACATCAATAGTTGCATTGACAGTTATCTTCGTTCTCAAATCGGGATTGC
TAGTTCTATTTTAAGTGGTAGTGAAAGTTACAGCGAAAGTTACATTTCTACTTACATTTTGGGTGAAAGTAGAAATAGTAGTGAAACCGGGAATTCCAGG
CTAAGAACTAGCACGAACGGCAGCGATTTCGCTCTAAGAGAAAATTCTAATGATCTCGGCGTAACTCAAAAATACAAGCATTTGTGGGTTCAATGTGAAA
TTTGTTATGGATTAAATTATAAGAAATTTTTTAAATCAAAAATGAATATTTGTGAACAATGTGGATATCATTTGAAAATGAGTAGTTCAGATAGAATTGA
ACTTTCGATTGATCCAGGCACTTGGGATCCTATGGATGAGGAGATGTTCTCTCTGGATCCCATTGACTTTCATTCAGAGGAGGAACCTTATAAAGATCGT
ATTGATTCTTATCAAAAAAAGACAGGATTAACCGAGGCCATTCAAACCGGCATAGGTCAACTAAACGGCATTCCCGTAGCAATTGGGGTTATGGATTTTC
AGTTTATGGGGGGTAGTATGGGATCGGTAGTAGGCGAGAAAATTACTCGTTTAATCGAGTATGCTACCAATCAATTTTTACCTCTTATTCTAGTGTGTGC
TTCCGGAGGAGCACGCATGCAAGAAGGAAGTTTGAGCTTGATGCAAATGGCTAAAATTTCTTCCGCTTTATATGATTATCAATCGAATAAAAAGTTAGTT
TATGTATCAATCCTTACATCTCCTACGACTGGTGGGGTGACAGCTAGTTTTGGTATGTTGGGGGATATCATTATTGCTGAACCCAACGCCTACATTGCAT
TTGCAGGTAAAAGAGTAATTGAACAAACATTGAATAAGACAGTACCTGAAGGTTCACAAGCGGCTGAATTTTTATTCCATAAGGGCTTATTCGATCCAAT
CGTACCACGTAATCTGTTAAAGGGCGTTCTGAGTGAGTTATTTCAGCTCCACGCTTTCTTTCCTTTGAATCATAACTTAAGTAGAACCTTAACTTAA
AA sequence
>Potri.013G162600.1 pacid=42812158 polypeptide=Potri.013G162600.1.p locus=Potri.013G162600 ID=Potri.013G162600.1.v4.1 annot-version=v4.1
MKKCWFHSMLSNVELEYRCRLSKSMDNLGPLENTSVSEDPILNDTEKNTYNWSHSDSSNVDHLVGVRDIRNLNVDDTFLVLGRDNKKDGYSIYFDIENQV
FGIDNNHSFLSKLEKEFSSYWNSSYLNKGSRSDDSHYDYSMYDNKYSWNNYINSCIDSYLRSQIGIASSILSGSESYSESYISTYILGESRNSSETGNSR
LRTSTNGSDFALRENSNDLGVTQKYKHLWVQCEICYGLNYKKFFKSKMNICEQCGYHLKMSSSDRIELSIDPGTWDPMDEEMFSLDPIDFHSEEEPYKDR
IDSYQKKTGLTEAIQTGIGQLNGIPVAIGVMDFQFMGGSMGSVVGEKITRLIEYATNQFLPLILVCASGGARMQEGSLSLMQMAKISSALYDYQSNKKLV
YVSILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGKRVIEQTLNKTVPEGSQAAEFLFHKGLFDPIVPRNLLKGVLSELFQLHAFFPLNHNLSRTLT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
ATCG00500 ATCG00500.1, AC... acetyl-CoA carboxylase carboxy... Potri.013G162600
[exp]
0 1
ATCG00530 ATCG00530.1, YC... CemA-like proton extrusion pro... Potri.016G094100
[exp]
3.74 0.9616
ATCG01250 ATCG01250.1, ND... NADH-Ubiquinone/plastoquinone ... Potri.011G084251
[exp]
3.87 0.9294
ATCG00500 ATCG00500.1, AC... acetyl-CoA carboxylase carboxy... Potri.005G150200
[exp]
4.24 0.9422
Potri.007G062061
[exp]
5.29 0.9529
ATCG00520 ATCG00520.1, YC... unfolded protein binding (.1) Potri.016G094067
[exp]
6.70 0.9541
ATCG00170 ATCG00170.1, RP... DNA-directed RNA polymerase fa... Potri.009G133701
[exp]
9.59 0.8919
ATCG00510 ATCG00510.1, PS... photsystem I subunit I (.1) Potri.016G094033
[exp]
13.67 0.9272
Potri.007G062081
[exp]
15.09 0.9250
ATCG00480 ATCG00480.1, AT... ATP synthase subunit beta (.1) Potri.007G062122
[exp]
15.16 0.9406
ATCG00905 ATCG00905.1, RP... ribosomal protein S12C (.1) Potri.001G305350
[exp]
15.19 0.9382

Potri.013G162600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.