Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description ATCG00490 902 / 0 ATCG00490.1, RBCL ribulose-bisphosphate carboxylases (.1) AT2G07732 204 / 2e-64 Ribulose bisphosphate carboxylase large chain, catalytic domain (.1) ATMG00280 184 / 1e-56 ATMG00280.1, ORF110A Ribulose bisphosphate carboxylase large chain, catalytic domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G062601 [exp] 230 / 2e-74 ATCG00490 213 / 1e-68 ribulose-bisphosphate carboxylases (.1) Potri.T005800 [exp] 216 / 1e-68 ATCG00490 184 / 7e-57 ribulose-bisphosphate carboxylases (.1) Potri.T124301 [exp] 211 / 2e-66 ATCG00490 180 / 4e-55 ribulose-bisphosphate carboxylases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032825 [exp] 109 / 7e-29 ATCG00490 125 / 2e-35 ribulose-bisphosphate carboxylases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00016 [poplar] [flax] RuBisCO_large Ribulose bisphosphate carboxylase large chain, catalytic domain PF02788 [poplar] [flax] RuBisCO_large_N Ribulose bisphosphate carboxylase large chain, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.013G162700.1 pacid=42811708 polypeptide=Potri.013G162700.1.p locus=Potri.013G162700 ID=Potri.013G162700.1.v4.1 annot-version=v4.1 ATGAGTTGTAGGGAGGGGCTTATGTCACCACAAACAGAGACTAAAGCAGGTGTTGGATTCAAGGCTGGTGTTAAAGATTATAAATTGACTTATTATACTC CTGACTATGAAACCAAAGATACTGATATCTTGGCAGCATTCCGAGTAACTCCTCAACCTGGAGTTCCGCCCGAGGAAGCAGGGGCCGCAGTAGCTGCTGA ATCTTCTACTGGTACATGGACAACTGTGTGGACCGACGGGCTTACCAGTCTTGATCGTTATAAGGGACGATGCTACGACATCGAGCCCGTTGCTGGAGAA GAAAATCAATTTATTGCTTATGTAGCTTACCCCTTAGACCTTTTTGAAGAAGGTTCTGTTACTAACATGTTTACTTCCATTGTGGGTAATGTATTTGGGT TCAAAGCCCTACGCGCTCTACGTCTGGAGGATTTGCGAATTCCTCCTGCTTATGTTAAAACTTTTCAAGGCCCACCTCATGGTATCCAAGTTGAAAGAGA TAAATTGAACAAGTATGGTCGCCCCCTATTGGGCTGTACTATTAAACCTAAATTGGGGTTATCCGCTAAGAATTACGGTAGAGCAGTTTATGAATGTCTA CGCGGTGGACTTGATTTTACCAAAGATGATGAGAACGTGAACTCCCAACCATTTATGCGTTGGAGAGATCGTTTCTTATTTTGTGCCGAAGCACTTTATA AAGCACAGGCTGAAACCGGTGAAATCAAAGGGCATTATTTAAACGCTACTGCAGGTACATGCGAAGAAATGATCAAAAGGGCTGTATTTGCCAGAGAATT GGGAGTTCCTATCGTAATGCATGACTACTTAACAGGGGGATTCACCGCAAACACTAGTTTGGCTCATTATTGCCGAGATAATGGTTTACTTCTTCACATC CATCGCGCAATGCATGCAGTTATTGATAGACAGAAAAATCATGGTATACACTTTCGTGTACTAGCTAAGGCATTACGTATGTCTGGTGGAGATCATATTC ACTCTGGTACCGTAGTAGGTAAACTTGAAGGGGAAAGAGACATAACTTTGGGTTTTGTTGATTTACTGCGTGATGATTTTGTTGAAAAAGATCGAAGCCG CGGTATTTATTTCACTCAAGATTGGGTCTCTCTACCGGGTGTTCTACCCGTGGCTTCGGGGGGTATTCACGTTTGGCATATGCCTGCTCTGACCGAGATC TTTGGAGATGATTCCGTACTACAATTCGGTGGAGGAACTTTAGGGCACCCTTGGGGAAATGCACCCGGTGCCGTTGCTAATCGAGTAGCTCTAGAAGCAT GTGTACAAGCTCGTAATGAGGGACGTGATCTTGCTCGTGAGGGTAATGAAATTATCCGTGAAGCTAGCAAATGGAGCCCTGAACTAGCTGCTGCTTGTGA AGTATGGAAGGAGATTAAATTTGAATTCCAAGCAATGGATACGTTGTAA
AA sequence Show only first row Show all	>Potri.013G162700.1 pacid=42811708 polypeptide=Potri.013G162700.1.p locus=Potri.013G162700 ID=Potri.013G162700.1.v4.1 annot-version=v4.1 MSCREGLMSPQTETKAGVGFKAGVKDYKLTYYTPDYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPVAGE ENQFIAYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECL RGGLDFTKDDENVNSQPFMRWRDRFLFCAEALYKAQAETGEIKGHYLNATAGTCEEMIKRAVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHI HRAMHAVIDRQKNHGIHFRVLAKALRMSGGDHIHSGTVVGKLEGERDITLGFVDLLRDDFVEKDRSRGIYFTQDWVSLPGVLPVASGGIHVWHMPALTEI FGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNEIIREASKWSPELAAACEVWKEIKFEFQAMDTL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
ATCG00490		ATCG00490.1, RB...	ribulose-bisphosphate carboxyl...		Potri.013G162700 [exp]	0	1
ATCG00350		ATCG00350.1, PS...	Photosystem I, PsaA/PsaB prote...		Potri.007G062582 [exp]	2.23	0.9228
ATCG00680		ATCG00680.1, PS...	photosystem II reaction center...		Potri.017G140700 [exp]	3.74	0.8915
ATCG00350		ATCG00350.1, PS...	Photosystem I, PsaA/PsaB prote...		Potri.004G128501 [exp]	5.74	0.8809
ATCG00280		ATCG00280.1, PS...	photosystem II reaction center...		Potri.010G032700 [exp]	6.00	0.8381
ATCG00350		ATCG00350.1, PS...	Photosystem I, PsaA/PsaB prote...		Potri.007G061621 [exp]	6.32	0.8623
ATCG00690		PSBTC, ATCG0069...	photosystem II reaction center...		Potri.011G113800 [exp]	6.92	0.8630
ATCG00330		ATCG00330.1, RP...	chloroplast ribosomal protein ...		Potri.013G142336 [exp]	7.34	0.8580
ATCG00690		PSBTC, ATCG0069...	photosystem II reaction center...		Potri.019G028351 [exp]	10.24	0.8577
ATCG00700		ATCG00700.1, PS...	photosystem II reaction center...		Potri.019G028300 [exp]	10.48	0.8469
					Potri.013G162900 [exp]	18.46	0.7823

Compare expression of checked genes

Potri.013G162700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.