Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description ATCG00430 409 / 4e-147 ATCG00430.1, PSBG photosystem II reaction center protein G (.1) AT5G11770 163 / 4e-50 NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G231701 [exp] 160 / 4e-49 AT5G11770 303 / 7e-106 NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039485 [exp] 157 / 7e-48 AT5G11770 352 / 4e-125 NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial (.1) Lus10014530 [exp] 157 / 9e-48 AT5G11770 360 / 4e-128 NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial (.1) Lus10032157 [exp] 140 / 4e-42 AT5G11770 277 / 7e-97 NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial (.1) Lus10032155 [exp] 140 / 4e-42 AT5G11770 277 / 7e-97 NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01058 [poplar] [flax] Oxidored_q6 NADH ubiquinone oxidoreductase, 20 Kd subunit
Representative CDS sequence Show only first row Show all	>Potri.013G163100.1 pacid=42812603 polypeptide=Potri.013G163100.1.p locus=Potri.013G163100 ID=Potri.013G163100.1.v4.1 annot-version=v4.1 ATGAAAACAAAAAAAAAAAAGAACATTGAGACAGTTATGAATTCCATTGAGTTTCCCTTACTTGATCGAACAACCCCAATTTCAGTTATTTCAACTACAT CAAATGATCTTTCAAATTGGTCAAGACTCTCCAGTTTATGGCCGCTTCTCTATGGTACCAGTTGTTGCTTCATTGAATTTGCTTCATTAATAGGCTCACG ATTCGACTTTGATCGTTATGGGCTAGTACCAAGATCTAGTCCTAGACAAGCGGACCTGATTTTAACAGCCGGCACAGTAACCATGAAAATGGCTCCTTCT TTAGTGAGATTATATGAACAAATGCCGGAACAAAAATATGTTATTGCTATGGGAGCATGTACAATTACAGGGGGAATGTTCAGTACGGATTCTTATAGTA CTGTTCGGGGAGTCGATAAGCTAATTCCTGTAGATGTCTATTTGCCGGGCTGCCCTCCTAAACCGGAGGCGATTATAGATGCTATAACAAAACTTCGTAA AAAAATATCTCGAGAGATTTATGAAGATCGAATTAGGTCTCAACAGGGGAATCGGTGTTTTACTACCAATCACAAGTTTCATATTGGACGTACTACTAAT ACTGGAAATTATGATCAAGGATTACTCTATCAACCGCCGTCTACTTCAAAAATAGCTCCTGAAGCCTTTTTCAAATACAAAAAGTCAGTATCGTCCCCTG AATTAGTAAATTAG
AA sequence Show only first row Show all	>Potri.013G163100.1 pacid=42812603 polypeptide=Potri.013G163100.1.p locus=Potri.013G163100 ID=Potri.013G163100.1.v4.1 annot-version=v4.1 MKTKKKKNIETVMNSIEFPLLDRTTPISVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPS LVRLYEQMPEQKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAIIDAITKLRKKISREIYEDRIRSQQGNRCFTTNHKFHIGRTTN TGNYDQGLLYQPPSTSKIAPEAFFKYKKSVSSPELVN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
ATCG00430		ATCG00430.1, PS...	photosystem II reaction center...		Potri.013G163100 [exp]	0	1
ATCG00630		ATCG00630.1, PS...	PSAJ (.1)		Potri.003G067501 [exp]	1.00	0.9435
ATCG00640		ATCG00640.1, RP...	ribosomal protein L33 (.1)		Potri.003G067400 [exp]	8.12	0.8952
ATCG00280		ATCG00280.1, PS...	photosystem II reaction center...		Potri.013G142760 [exp]	8.48	0.9180
ATCG00720		ATCG00720.1, PE...	photosynthetic electron transf...		Potri.011G074750 [exp]	20.12	0.8973
ATCG00420		ATCG00420.1, ND...	NADH dehydrogenase subunit J (...		Potri.013G163200 [exp]	20.37	0.9188
ATCG00380		ATCG00380.1, RP...	chloroplast ribosomal protein ...		Potri.013G163300 [exp]	22.27	0.8852
ATCG01100		ATCG01100.1, ND...	NADH dehydrogenase family prot...		Potri.013G074800 [exp]	22.62	0.9149
ATCG00720		ATCG00720.1, PE...	photosynthetic electron transf...		Potri.011G113784 [exp]	31.43	0.8524
ATCG00720		ATCG00720.1, PE...	photosynthetic electron transf...		Potri.007G062202 [exp]	32.40	0.8570
ATCG00530		ATCG00530.1, YC...	CemA-like proton extrusion pro...		Potri.013G162300 [exp]	37.41	0.8641

Compare expression of checked genes

Potri.013G163100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.