Plant FIBer expression Database

Potri.013G163200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
ATCG00420 298 / 2e-105 ATCG00420.1, NDHJ NADH dehydrogenase subunit J (.1)
ATMG00070 46 / 2e-06 ATMG00070.1, NAD9 NADH dehydrogenase subunit 9 (.1)
AT5G55480 39 / 0.0007 GPDL1, GDPDL4, SVL1 glycerophosphodiesterase-like 1, Glycerophosphodiester phosphodiesterase \(GDPD\) like 4, SHV3-like 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G066660
[exp]
48 / 4e-07 ATMG00070 373 / 3e-134 NADH dehydrogenase subunit 9 (.1)
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00329 Complex1_30kDa Respiratory-chain NADH dehydrogenase, 30 Kd subunit
Representative CDS sequence
>Potri.013G163200.1 pacid=42811536 polypeptide=Potri.013G163200.1.p locus=Potri.013G163200 ID=Potri.013G163200.1.v4.1 annot-version=v4.1
ATGCGGGGTCCTCTGTCTGCTTGGCTGGTCAAACATGGGCTAGTTCATAGATCTTTGGGCTTTGATTACCAAGGAATAGAGACTTTACAAATAAAGCCCG
AGGATTGGCATTCCATTGCTGTCATTCTATATGTATATGGTTACAACTATCTGCGTTCCCAATGTGCCTATGATGTAGCACCGGGCGGGCTGTTAGCTAG
TATATATCATCTTACGAGAATAGAATATGGTATTCTAGATCAACCTGAAGAAGTATGTATAAAAGTATTTGCTCCTAGGAAGAATCCTAGAATTCCATCT
GTTTTCTGGGTTTGGAAAAGTGCGGATTTTCAAGAAAGAGAATCTTATGATATGTTGGGAATCTCTTATGATAATCATCCACGTCTGAAACGTATCTTAA
TGCCGGAAAGTTGGATAGGGTGGCCTTTACGTAAAGATTATATTGCTCCCAATTTTTATGAAATACAAGATGCTCATTGA
AA sequence
>Potri.013G163200.1 pacid=42811536 polypeptide=Potri.013G163200.1.p locus=Potri.013G163200 ID=Potri.013G163200.1.v4.1 annot-version=v4.1
MRGPLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASIYHLTRIEYGILDQPEEVCIKVFAPRKNPRIPS
VFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
ATCG00420 ATCG00420.1, ND... NADH dehydrogenase subunit J (... Potri.013G163200
[exp]
0 1
ATCG01110 ATCG01110.1, ND... NAD(P)H dehydrogenase subunit ... Potri.013G074650
[exp]
4.24 0.9698
ATCG00210 ATCG00210.1, YC... electron transporter, transfer... Potri.013G142332
[exp]
8.00 0.9620
ATCG01120 ATCG01120.1, RP... chloroplast ribosomal protein ... Potri.012G027700
[exp]
9.79 0.9641
ATCG01100 ATCG01100.1, ND... NADH dehydrogenase family prot... Potri.013G074800
[exp]
11.22 0.9617
ATCG00710 ATCG00710.1, PS... photosystem II reaction center... Potri.019G028200
[exp]
16.24 0.9608
ATCG00130 ATCG00130.1, AT... ATPase, F0 complex, subunit B/... Potri.013G137900
[exp]
17.74 0.9558
ATCG00430 ATCG00430.1, PS... photosystem II reaction center... Potri.013G163100
[exp]
20.37 0.9188
Potri.013G142972
[exp]
31.46 0.9495
ATCG00800 ATCG00800.1, RP... structural constituent of ribo... Potri.017G072340
[exp]
34.24 0.9490
ATCG01130 ATCG01130.1, YC... Ycf1 protein (.1) Potri.013G075232
[exp]
34.98 0.9488

Potri.013G163200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.