Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description ATCG00380 358 / 6e-128 ATCG00380.1, RPS4 chloroplast ribosomal protein S4 (.1) AT5G39850 44 / 1e-05 Ribosomal protein S4 (.1) AT5G15200 43 / 4e-05 Ribosomal protein S4 (.1.2) ATMG00290 42 / 0.0001 ATMG00290.1, RPS4 mitochondrial ribosomal protein S4 (.1) AT2G07734 42 / 0.0001 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G209801 [exp] 44 / 5e-06 AT5G15200 200 / 7e-67 Ribosomal protein S4 (.1.2) Potri.006G209700 [exp] 45 / 9e-06 AT5G39850 325 / 6e-115 Ribosomal protein S4 (.1) Potri.018G062300 [exp] 45 / 9e-06 AT5G39850 332 / 1e-117 Ribosomal protein S4 (.1) Potri.016G076500 [exp] 44 / 2e-05 AT5G39850 350 / 1e-124 Ribosomal protein S4 (.1) Potri.016G076800 [exp] 44 / 2e-05 AT5G39850 350 / 1e-124 Ribosomal protein S4 (.1) Potri.011G094500 [exp] 43 / 5e-05 AT5G39850 336 / 3e-119 Ribosomal protein S4 (.1) Potri.007G056100 [exp] 42 / 6e-05 AT5G39850 337 / 1e-119 Ribosomal protein S4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008624 [exp] 42 / 8e-05 AT5G15200 342 / 8e-122 Ribosomal protein S4 (.1.2) Lus10012839 [exp] 42 / 9e-05 AT5G15200 333 / 4e-118 Ribosomal protein S4 (.1.2) Lus10030487 [exp] 42 / 9e-05 AT5G15200 333 / 4e-118 Ribosomal protein S4 (.1.2) Lus10042193 [exp] 42 / 0.0003 AT5G39850 327 / 2e-108 Ribosomal protein S4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0492 [poplar] [flax] S4 PF01479 [poplar] [flax] S4 S4 domain
Representative CDS sequence Show only first row Show all	>Potri.013G163300.1 pacid=42812494 polypeptide=Potri.013G163300.1.p locus=Potri.013G163300 ID=Potri.013G163300.1.v4.1 annot-version=v4.1 ATGTCACGTTACCGAGGGCCTCGTTTCAAAAAAATACGCCGTCTGGGGGCTTTACCGGGACTAACTAGTAAAAGGCCTAGAGCCGGGAGCGATCTTAGAA ATCAATCGCGCGCCGGTAAAAAATCTCAATATCGTATTCGTTTAGAAGAAAAACAAAAATTGCGTTTTCATTATGGTCTTACAGAACGACAATTGCTTAA ATACGTTCGTATCGCCGCAAAAGCCAAAGGGTCAACAGGTCAGGTTTTACTACAATTACTTGAAATGCGTTTGGATAACATCCTTTTTCGATTAGGTATG GCGTCAACTATTCCTCGAGCCCGCCAATTAGTTAACCATAGACATATTTTAGTTAATGGTCGTATAGTAGATATACCAAGTTATCGCTGCAAACCCCGAG ATATTATTACAGCGAAGGATGAACAAAAATCTAGAGTTATGATTCAAAATTCTCTTGATTCATTCCCCCAGGAGGAATTGCCAAAACATTTGACTCTTCA CCCATTCCAATATAAAGGATTGGTCAATCACATAATAGATAGTAAATGGATTGGCTTGAAAATAAATGAATTGTTAGTTGTAGAATATTATTCTCGTCAG ACTTAA
AA sequence Show only first row Show all	>Potri.013G163300.1 pacid=42812494 polypeptide=Potri.013G163300.1.p locus=Potri.013G163300 ID=Potri.013G163300.1.v4.1 annot-version=v4.1 MSRYRGPRFKKIRRLGALPGLTSKRPRAGSDLRNQSRAGKKSQYRIRLEEKQKLRFHYGLTERQLLKYVRIAAKAKGSTGQVLLQLLEMRLDNILFRLGM ASTIPRARQLVNHRHILVNGRIVDIPSYRCKPRDIITAKDEQKSRVMIQNSLDSFPQEELPKHLTLHPFQYKGLVNHIIDSKWIGLKINELLVVEYYSRQ T

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
ATCG00380		ATCG00380.1, RP...	chloroplast ribosomal protein ...		Potri.013G163300 [exp]	0	1
ATCG01040		ATCG01040.1, YC...	Cytochrome C assembly protein ...		Potri.001G342966 [exp]	2.44	0.9258
ATCG00040		ATCG00040.1, MA...	maturase K (.1)		Potri.013G138201 [exp]	3.46	0.9449
ATCG00530		ATCG00530.1, YC...	CemA-like proton extrusion pro...		Potri.013G162300 [exp]	6.63	0.9396
ATCG01250		ATCG01250.1, ND...	NADH-Ubiquinone/plastoquinone ...		Potri.011G084251 [exp]	14.83	0.8997
ATCG00510		ATCG00510.1, PS...	photsystem I subunit I (.1)		Potri.013G162500 [exp]	15.42	0.9081
ATCG00080		ATCG00080.1, PS...	photosystem II reaction center...		Potri.013G138690 [exp]	16.73	0.8741
ATCG00640		ATCG00640.1, RP...	ribosomal protein L33 (.1)		Potri.003G067400 [exp]	17.88	0.8846
ATCG00520		ATCG00520.1, YC...	unfolded protein binding (.1)		Potri.013G162400 [exp]	18.65	0.9101
ATCG00570		ATCG00570.1, PS...	photosystem II reaction center...		Potri.013G162000 [exp]	18.97	0.9027
ATCG00530		ATCG00530.1, YC...	CemA-like proton extrusion pro...		Potri.016G094100 [exp]	19.41	0.9087

Compare expression of checked genes

Potri.013G163300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.