Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16720 863 / 0 HCF173 high chlorophyll fluorescence phenotype 173 (.1) AT4G18810 99 / 2e-21 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT4G31530 56 / 3e-08 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G37660 54 / 1e-07 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G02240 53 / 2e-07 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G35250 53 / 3e-07 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G33360 52 / 4e-07 FLDH farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT5G18660 48 / 1e-05 PCB2, DVR PALE-GREEN AND CHLOROPHYLL B REDUCED 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G72640 45 / 6e-05 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G15950 45 / 0.0001 IRX4, ATCCR1, CCR1 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G003500 [exp] 982 / 0 AT1G16720 852 / 0.0 high chlorophyll fluorescence phenotype 173 (.1) Potri.004G061200 [exp] 88 / 6e-18 AT4G18810 812 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.006G086800 [exp] 56 / 4e-08 AT2G37660 450 / 2e-160 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G143000 [exp] 53 / 3e-07 AT4G35250 642 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G183100 [exp] 52 / 5e-07 AT4G35250 650 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G063800 [exp] 50 / 2e-06 AT1G72640 348 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G127400 [exp] 49 / 4e-06 AT4G33360 494 / 4e-177 farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.001G253900 [exp] 49 / 6e-06 AT4G31530 399 / 1e-139 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.003G138400 [exp] 47 / 2e-05 AT5G42800 202 / 9e-62 dihydroflavonol 4-reductase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033322 [exp] 864 / 0 AT1G16720 874 / 0.0 high chlorophyll fluorescence phenotype 173 (.1) Lus10034781 [exp] 853 / 0 AT1G16720 870 / 0.0 high chlorophyll fluorescence phenotype 173 (.1) Lus10029255 [exp] 101 / 3e-22 AT4G18810 851 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10007308 [exp] 88 / 5e-18 AT4G18810 850 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10022420 [exp] 56 / 3e-08 AT4G31530 415 / 4e-146 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10003328 [exp] 56 / 4e-08 AT4G35250 653 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024383 [exp] 55 / 6e-08 AT2G37660 458 / 1e-163 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009715 [exp] 54 / 1e-07 AT4G31530 408 / 1e-144 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10010846 [exp] 54 / 2e-07 AT2G37660 451 / 2e-160 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10022632 [exp] 53 / 4e-07 AT4G35250 640 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF05368 [poplar] [flax] NmrA NmrA-like family CL0202 [poplar] [flax] GBD PF08547 [poplar] [flax] CIA30 Complex I intermediate-associated protein 30 (CIA30) CL0063 [poplar] [flax] NADP_Rossmann PF13460 [poplar] [flax] NAD_binding_10 NAD(P)H-binding
Representative CDS sequence Show only first row Show all	>Potri.014G000400.1 pacid=42763353 polypeptide=Potri.014G000400.1.p locus=Potri.014G000400 ID=Potri.014G000400.1.v4.1 annot-version=v4.1 ATGAGAGCAGCAGCAGCAAGTGCAAGTGTGACTCCAACGACAAATGCGAGTGCCAGTTTGACGAACAGCAATCACTTCAACTTCACCTCACACCGCAAGA TTTACACGTCTCTCCCTATCTCAACAGTGAAGAACAGCCACAAGAAGAGCACATTAGTTGTGGTGAGAGCAATCAAGGACAGGAAGGAGACGGAGACAGA GACAGAGAATATGAAAGAACATAACAAGGAAAGCACAACAAAGCAGCAACCACTGAATTTGGAGGATGTAAACCCTGTTGGACTTGGAAGGAAGTCAAGG CAGATATTCGATGAGGTGTGGAGGAAGTTCTCAGGGTTGGGACAGATATCAAGAACAACACGTGCAGATGACAAGGAAGCTCTTGATGCATTGCTCATCA GGGAAGGTCCCATGTGTGAGTTTGCTATCCCTGGTGCCCAGAACACCACTGTTCTTGTTGTTGGTGCCACCAGTCGCATTGGCCGCATTGTTGTTAGGAA ACTTATGCTCAGGGGTTACACTGTTAAGGCTTTGGTGAGGAAGGCAGATGAGGAAGTTGTGAACATGCTTCCCAGGTCAGTGGAGATCATGATAGGGGAT GTGGGAGATCCCTCTACCCTTAAGGCAGCGGTGGTGGGCTGCAACAAAATCATATATTGTGCCACTGCTCGTTCTTCCATCACTGGGGATCTTTTCAGAG TTGATCACCAAGGGGTTTCTAATCTCACCAAAGCCCTTCAGGACTACAACAACAAACTAGCTCAACTACGAGCCGGAAAAAGCAGCAAAAGCAAGCTCTT GCTTGCAAAGTTCAAATCCGCAGATTCATTGAATGGCTGGGAAGTTCGTCAAGGAACTTACTTCCAGGATGCAGTTGCTTCGAAGTATGATGCAGGAATG GATGCTAAATTTGAGTTCACCGAGGCCGGAGATGCAGTTTTCTCAGGGTATGTTTTCACTAGGGGAGGCTATGTTGAATTGTCAAAAAAGCTATCACTTC CTTTGGGTTATACTCTTGACAGGTATGAAGGTCTAGTGCTCTCTGTTGGTGGAAATGGAAGATCTTATGTTTTGATACTCGAAGCTGGTCCTTCAGCTGA CACAACTCAAAGCAAATTGTATTTTGCAAGAATTAGCACCAAAGTAGGATTTTGTAGGGTAAGAGTGCCATTTTCTGCCTTCCGCCCTGTAAAACCAGAT GATCTGCCATTGGACCCATTTCTTGTACACACAATGACCATCCGCTTTGAGCCCCGAAGACAGAGACCTGTTGAAGCACCTGCAGGAGCGAAGCAAGACC TGAGAAGCTTTAAGCTTATATTGGAATACATAAAAGCTTTACCTACTGGGCAAGAAACAGACTTTGTCTTGGTCTCATGTACAGGATTAGGAGTGGAACC CACAAGAAGGGAACAAGTTCTGAAGGCCAAGAGGGCCGGGGAAGACTCGCTGAGGAGATCAGGACTTGGATACACAATCATTCGCCCTGGTCCCCTACAG GAGGAGCCAGGTGGTCAACGTGCACTAATATTTGATCAAGGAAATAGGATTTCTCAGGGAATTAGTTGTGCTGATGTGGCTGATATCTGCGTGAAGGCAT TGCACGATTCGACTGCAAGAAACAAGAGCTTTGATGTCTGTTACGAATACGTTGCTGAGCAAGGGAGGGAGCTCTATGAACTTGTGGCGCATTTACCTGA CAAAGCAAACAACTATTTGACACCAGCACTATCTGTTTTGGAGAAGAACACTTGA
AA sequence Show only first row Show all	>Potri.014G000400.1 pacid=42763353 polypeptide=Potri.014G000400.1.p locus=Potri.014G000400 ID=Potri.014G000400.1.v4.1 annot-version=v4.1 MRAAAASASVTPTTNASASLTNSNHFNFTSHRKIYTSLPISTVKNSHKKSTLVVVRAIKDRKETETETENMKEHNKESTTKQQPLNLEDVNPVGLGRKSR QIFDEVWRKFSGLGQISRTTRADDKEALDALLIREGPMCEFAIPGAQNTTVLVVGATSRIGRIVVRKLMLRGYTVKALVRKADEEVVNMLPRSVEIMIGD VGDPSTLKAAVVGCNKIIYCATARSSITGDLFRVDHQGVSNLTKALQDYNNKLAQLRAGKSSKSKLLLAKFKSADSLNGWEVRQGTYFQDAVASKYDAGM DAKFEFTEAGDAVFSGYVFTRGGYVELSKKLSLPLGYTLDRYEGLVLSVGGNGRSYVLILEAGPSADTTQSKLYFARISTKVGFCRVRVPFSAFRPVKPD DLPLDPFLVHTMTIRFEPRRQRPVEAPAGAKQDLRSFKLILEYIKALPTGQETDFVLVSCTGLGVEPTRREQVLKAKRAGEDSLRRSGLGYTIIRPGPLQ EEPGGQRALIFDQGNRISQGISCADVADICVKALHDSTARNKSFDVCYEYVAEQGRELYELVAHLPDKANNYLTPALSVLEKNT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16720		HCF173	high chlorophyll fluorescence ...		Potri.014G000400 [exp]	0	1
AT5G35970			P-loop containing nucleoside t...		Potri.013G073900 [exp]	4.12	0.9205
AT5G01410		PDX1, ATPDX1.3,...	REDUCED SUGAR RESPONSE 4, ARAB...		Potri.016G116400 [exp]	9.38	0.9092	Pt-PDX1.2
AT5G22830		MRS2-11, GMN10,...	MAGNESIUM TRANSPORTER 10, magn...		Potri.009G151400 [exp]	19.62	0.8958	ATMGT10.1
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.006G268500 [exp]	21.49	0.8759
AT1G53670		MSRB1, ATMSRB1	methionine sulfoxide reductase...		Potri.011G114300 [exp]	24.81	0.8912
AT3G01060			unknown protein		Potri.017G090100 [exp]	27.49	0.9011
AT5G20380		PHT4;5	phosphate transporter 4;5 (.1)		Potri.006G062300 [exp]	28.56	0.8811
AT4G37980		ELI3-1, ATCAD7	CINNAMYL-ALCOHOL DEHYDROGENASE...		Potri.006G199100 [exp]	29.10	0.8891	ELI3.1
AT1G42970		GAPB	glyceraldehyde-3-phosphate deh...		Potri.005G254100 [exp]	29.52	0.8986	Pt-GAPB.2
AT1G67090		RBCS1A	ribulose bisphosphate carboxyl...		Potri.004G100000 [exp]	32.44	0.8898

Compare expression of checked genes

Potri.014G000400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.