Plant FIBer expression Database

Potri.014G000600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G79020 561 / 0 Enhancer of polycomb-like transcription factor protein (.1)
AT1G16690 519 / 0 Enhancer of polycomb-like transcription factor protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033318
[exp]
613 / 0 AT1G79020 586 / 0.0 Enhancer of polycomb-like transcription factor protein (.1)
Lus10034778
[exp]
612 / 0 AT1G79020 577 / 0.0 Enhancer of polycomb-like transcription factor protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF10513 EPL1 Enhancer of polycomb-like
Representative CDS sequence
>Potri.014G000600.1 pacid=42764762 polypeptide=Potri.014G000600.1.p locus=Potri.014G000600 ID=Potri.014G000600.1.v4.1 annot-version=v4.1
ATGAGCAGGCTTTCGTTTCGACCGCGTCCGCTGGACATTCACAAGAAGCTGCCTATCGTAAAATCTGTTAAAGAATTTGAAGAAGATGACAACAACACTC
CGAATTCAACACGCAACTCTCAGCAGCAGCAGCAGCTTCTCCTCCGCATCTCTTCTTCACTTGCTCCTGCTCCTGCTCCTGATATTGACCAAAATGATGT
CCACCAACACCACCACATTATTCCTTCAAAGAAAGTTGCTGCCGAAATACCTACTCCCCAGTTTGTCGTTGTTGATACCTATGAAAGGGATTATGGTCGC
ACTTTTGCTCCCCCCACTTCCTATCTTCGTGCTAGGGGAGCTCGAGCTGAGCTTGGTGAGTTTGTTGAGTATGATTTGGATAATGAGGATGAGGATTGGC
TTCATGATTTCTACAAAAAGGATAGGAAGAATCTTTCGCCTGAAAAGTTTGAACTTCTGCTTTTCAAGTTGGAGGTGTTGGATCATAAAGCTCGGGAAAG
AGCAGGGGTTATAACGCCTACTCTTGCTTCACCAATCCCTGTACTTCTACAATTTGATGCAGCTCTTGAGGCCTTGCAAGCTCAACCTCAAACTCAGTCC
ACCCGTTATGCAGTTTTCCAGTCTGTCTATAATTATTGGAAAGATAAGCGTGAAAGATGGAAGAAACCAATTCTACGGCGTTTGCAGCCTCCTCCGCCAG
TTAATGATACCAATCCTTACAATGTGTTTAGACCAAGGGAGAAGGCCCACAGGCTGCACACCAGAAGGATGCAAAGGAGGGAAAATAATGTGCAATCATT
TGACAAGCTTCGCCAGGTCAGACGCAACCTTGAACAAGCCAAGACCATACTTGAGGCTCTGATTAAGAGAGAGGAGAAAAAGAGAGAGGCGATGGAGAGT
GAGGTGAGCCTCCAAAGGATCCAAATGAAGTACAAGCATGAAACTGAGCTCCTTGAAGACAGCTTGGCTGTTCCTGGATTCCCTCTCTCTTCCAAGTTCG
CTTCAAGTGAAGATGAATTTGTTGATTCAGATGACCATGCAAACAGCCGTCCGCGTAGCAGACCTGCACTTCAAAATCCACCTGTGACGGACTCCAATCC
GCTGGCAGCTCCAGCTGTAACCGTGAAGCAAGAGTTTAGACGGCGGCATACACCACTTGGATGGCTCAATAAAATGGACCCTCTTGAGCCAGTGCTTTTG
TTCACAAAGCCTCTGGTTCCAGAAAAGTTGGCAGCTGCATGCATTGTACCACCAGCAGATTCGTCAATGAAGAACGATACATCAATGCCACCATATAGAT
TTCATGGAAGAATTGGCCGGGGTGGGCGAATTGTATTTGATAGATGGAACCCATTGTTACAAACTCCAATTGATCTTGGTAACTCTTTTTATATACCGCC
AAGACCGAGGCCCTCAACATACAATTGA
AA sequence
>Potri.014G000600.1 pacid=42764762 polypeptide=Potri.014G000600.1.p locus=Potri.014G000600 ID=Potri.014G000600.1.v4.1 annot-version=v4.1
MSRLSFRPRPLDIHKKLPIVKSVKEFEEDDNNTPNSTRNSQQQQQLLLRISSSLAPAPAPDIDQNDVHQHHHIIPSKKVAAEIPTPQFVVVDTYERDYGR
TFAPPTSYLRARGARAELGEFVEYDLDNEDEDWLHDFYKKDRKNLSPEKFELLLFKLEVLDHKARERAGVITPTLASPIPVLLQFDAALEALQAQPQTQS
TRYAVFQSVYNYWKDKRERWKKPILRRLQPPPPVNDTNPYNVFRPREKAHRLHTRRMQRRENNVQSFDKLRQVRRNLEQAKTILEALIKREEKKREAMES
EVSLQRIQMKYKHETELLEDSLAVPGFPLSSKFASSEDEFVDSDDHANSRPRSRPALQNPPVTDSNPLAAPAVTVKQEFRRRHTPLGWLNKMDPLEPVLL
FTKPLVPEKLAAACIVPPADSSMKNDTSMPPYRFHGRIGRGGRIVFDRWNPLLQTPIDLGNSFYIPPRPRPSTYN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G79020 Enhancer of polycomb-like tran... Potri.014G000600
[exp]
0 1
AT3G06670 binding (.1.2) Potri.010G142200
[exp]
5.29 0.8683
AT4G04885 PCFS4 PCF11P-similar protein 4 (.1) Potri.011G024800
[exp]
5.83 0.8821
Potri.004G206650
[exp]
10.72 0.8244
AT1G72390 unknown protein Potri.001G165800
[exp]
11.22 0.8660
AT4G29860 EMB2757, TAN TANMEI, EMBRYO DEFECTIVE 2757,... Potri.009G002100
[exp]
12.84 0.8184
AT1G06950 ATTIC110, TIC11... ARABIDOPSIS THALIANA TRANSLOCO... Potri.013G154300
[exp]
14.83 0.8567
AT5G22450 unknown protein Potri.010G238400
[exp]
14.96 0.8613
AT3G26730 RING/U-box superfamily protein... Potri.014G145300
[exp]
18.81 0.8519
AT4G16510 YbaK/aminoacyl-tRNA synthetase... Potri.001G122501
[exp]
19.59 0.8238
AT1G01930 C2H2ZnF zinc finger protein-related (.... Potri.002G149800
[exp]
22.04 0.8463

Potri.014G000600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.