Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63010 425 / 9e-150 Transducin/WD40 repeat-like superfamily protein (.1) AT2G32950 61 / 4e-10 FUS1, EMB168, DET340, ATCOP1, COP1 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) AT5G58230 49 / 2e-06 MSI1, MEE70, ATMSI1 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) AT1G29260 46 / 2e-05 PEX7, ATPEX7 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) AT2G19520 45 / 5e-05 ATMSI4, ACG1, NFC4, NFC04, FVE MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) AT4G18900 45 / 5e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT4G15900 45 / 7e-05 PRL1 pleiotropic regulatory locus 1 (.1) AT5G43920 44 / 0.0001 transducin family protein / WD-40 repeat family protein (.1) AT4G35050 44 / 0.0001 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) AT4G11110 44 / 0.0002 SPA2 SPA1-related 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G087300 [exp] 366 / 4e-128 AT5G63010 276 / 7e-93 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G057600 [exp] 58 / 2e-09 AT1G29260 556 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Potri.014G159300 [exp] 57 / 7e-09 AT2G32950 1091 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G066600 [exp] 55 / 1e-08 AT1G29260 379 / 3e-134 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Potri.011G021700 [exp] 54 / 8e-08 AT2G32950 686 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G002700 [exp] 52 / 3e-07 AT2G32950 832 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G095300 [exp] 51 / 7e-07 AT2G46340 846 / 0.0 SUPPRESSOR OF PHYA-105 1, SPA (suppressor of phyA-105) protein family (.1) Potri.001G094500 [exp] 49 / 6e-06 AT4G11110 1016 / 0.0 SPA1-related 2 (.1) Potri.014G179700 [exp] 47 / 1e-05 AT5G58230 790 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027338 [exp] 495 / 3e-177 AT5G63010 432 / 2e-152 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039042 [exp] 412 / 1e-144 AT5G63010 377 / 7e-131 Transducin/WD40 repeat-like superfamily protein (.1) Lus10035332 [exp] 62 / 4e-10 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10029990 [exp] 61 / 4e-10 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10007274 [exp] 49 / 2e-06 AT1G29260 529 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Lus10029221 [exp] 49 / 3e-06 AT1G29260 531 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Lus10033459 [exp] 48 / 7e-06 AT5G58230 723 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10005074 [exp] 47 / 1e-05 AT4G35050 590 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10020917 [exp] 47 / 2e-05 AT5G58230 696 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10033460 [exp] 47 / 2e-05 AT5G58230 781 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.014G000900.1 pacid=42762422 polypeptide=Potri.014G000900.1.p locus=Potri.014G000900 ID=Potri.014G000900.1.v4.1 annot-version=v4.1 ATGGAAGTGGCACAGTGTTATCTAGATGGCAATGCAGACGCAGTAGAGTTTTGTACGCATGAGCCGTATCACAATGTTTTAGCAGCTGCAACTTACACTT TGCAGGAGGGGGATAGGCCGAGTCGAACTGGTAGCATTTCACTTTTCGATGTAAATCCTGATGTGGGTCGGTTCGAGTTGTTTTACCGCGTGGAGACTGG GGGGATTTTTGACATTAAGTGGAGTCCTGTCGTTGGGAATGTGGGTCCAATGCTTGCGCAAGCTGATGCTGATGGTTGCTTGAGAGTTCATGGATTAGAG TGCTGTTCTAATGGAGGGGACTCTCTATCTCTAAGAGAGATAGTTGGTGAAAAAATAAGCTCCTCTATGTGTCTTTGTGTGGACTGGAATCCATCAACCA CATCTATCTCAGTGGGGCTTTCTGATGGTTCTGTATCTGTAGTGTCCTTTTCAGAGTCCCAGTTAAATGTAATTCAAGAGTGGAAAGCACATGATTTTGA GCTATGGGCTGCATCATTTGACATTCACCAACCTCAGTTGGTATACACTGGTTCGGATGATTGCAAATTCAGTTGTTGGGATTTAAGGGATGGTCCTTCC AATTTGGTGTTTCAGAATTCTAAAGTCCATAAGATGGGTGTCTGTTGCATTGCAAAGAGTCCTAGGGACCCTAATATCTTACTCACCGGTAGTTATGATG AGTATCTAAGGCTATGGGATGTAAGATCAATTTCCAAACCAGTCAATGAAACTTCAGTTTGTTTAGGGGGAGGAGTTTGGAGAGTCAAGCACCACCCATA TGTACCAGGCGTGGTCTTAGCAGCTTGCATGCACAATTGCTTTGCAGTTGTGAAGATTGATGAGGAGAAAGGAGAAGTGATGGAAACCTATACCAAGCAT GGCTCACTTGCTTACGGTGCAGATTGGCAGAGGGGGAATTTATCTCATAAGGTCAAACAAAACAGCTCTGTAGTGGCTACTTGTTCCTTTTATGATCGGC TTCTTCAGATATGGATACCAGAAAGTAGCGTTGTTAAGCAACTTTAA
AA sequence Show only first row Show all	>Potri.014G000900.1 pacid=42762422 polypeptide=Potri.014G000900.1.p locus=Potri.014G000900 ID=Potri.014G000900.1.v4.1 annot-version=v4.1 MEVAQCYLDGNADAVEFCTHEPYHNVLAAATYTLQEGDRPSRTGSISLFDVNPDVGRFELFYRVETGGIFDIKWSPVVGNVGPMLAQADADGCLRVHGLE CCSNGGDSLSLREIVGEKISSSMCLCVDWNPSTTSISVGLSDGSVSVVSFSESQLNVIQEWKAHDFELWAASFDIHQPQLVYTGSDDCKFSCWDLRDGPS NLVFQNSKVHKMGVCCIAKSPRDPNILLTGSYDEYLRLWDVRSISKPVNETSVCLGGGVWRVKHHPYVPGVVLAACMHNCFAVVKIDEEKGEVMETYTKH GSLAYGADWQRGNLSHKVKQNSSVVATCSFYDRLLQIWIPESSVVKQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63010			Transducin/WD40 repeat-like su...		Potri.014G000900 [exp]	0	1
AT1G49880		EMB3106, AtErv1...	EMBRYO DEFECTIVE 3106, Erv1/Al...		Potri.009G090200 [exp]	1.00	0.9297
AT4G04190			unknown protein		Potri.009G146100 [exp]	1.41	0.9054
AT2G13840			Polymerase/histidinol phosphat...		Potri.001G206400 [exp]	3.87	0.8964
AT4G02990		RUG2, BSM	RUGOSA 2, BELAYA SMERT, Mitoch...		Potri.014G137400 [exp]	6.63	0.8741
AT1G53530			Peptidase S24/S26A/S26B/S26C f...		Potri.007G071400 [exp]	8.48	0.8638
AT5G64650			Ribosomal protein L17 family p...		Potri.007G107100 [exp]	9.21	0.8445
AT1G76050			Pseudouridine synthase family ...		Potri.002G016800 [exp]	11.18	0.8721
AT3G10350			P-loop containing nucleoside t...		Potri.008G037100 [exp]	11.48	0.8688
AT3G29230			Tetratricopeptide repeat (TPR)...		Potri.004G125500 [exp]	13.41	0.8621
AT1G63780		IMP4	Ribosomal RNA processing Brix ...		Potri.003G201100 [exp]	13.49	0.8524	Pt-IMP4.2

Compare expression of checked genes

Potri.014G000900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.