Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13062 416 / 3e-144 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3) AT1G55960 398 / 4e-137 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT4G14500 139 / 7e-37 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) AT1G64720 129 / 1e-33 CP5 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT3G23080 128 / 4e-33 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) AT5G54170 126 / 3e-32 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G002700 [exp] 578 / 0 AT3G13062 390 / 5e-134 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3) Potri.015G005000 [exp] 128 / 1e-32 AT1G64720 474 / 1e-166 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.008G162600 [exp] 124 / 3e-31 AT4G14500 581 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Potri.001G450100 [exp] 123 / 5e-31 AT1G64720 489 / 6e-173 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.012G021400 [exp] 123 / 7e-31 AT1G64720 478 / 2e-168 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.011G151500 [exp] 122 / 1e-30 AT1G64720 515 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.010G076500 [exp] 119 / 2e-29 AT4G14500 571 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033334 [exp] 404 / 2e-139 AT1G55960 384 / 5e-132 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10034791 [exp] 277 / 6e-89 AT3G13062 346 / 2e-115 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3) Lus10033247 [exp] 137 / 5e-36 AT1G64720 523 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10041166 [exp] 125 / 1e-31 AT4G14500 607 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Lus10021883 [exp] 124 / 2e-31 AT4G14500 605 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Lus10032938 [exp] 117 / 7e-29 AT1G64720 437 / 2e-152 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10008281 [exp] 99 / 1e-23 AT1G64720 374 / 1e-130 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [poplar] [flax] Bet_v_1_like PF01852 [poplar] [flax] START START domain
Representative CDS sequence Show only first row Show all	>Potri.014G001100.1 pacid=42764119 polypeptide=Potri.014G001100.1.p locus=Potri.014G001100 ID=Potri.014G001100.1.v4.1 annot-version=v4.1 ATGGGTTTCTTTGGTTTCAATGGATCATCACTCTATTCTTCTTTAAAATCTTCAATGGATTTTTGGTTCCAAAATGAAAGACTGAATTTTTGTTATGGAT GTGCTATTCTCTTTGTTCTTCTTTGCATTATCCTTTACAACTTCTCCACAAGACTGCTCAGATTCTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC TAGGCGACATAGCGTTTCTTTTTCTTCTCCAGCTGCTTCTGCTACTGATATTGCCTCCTCTAATTCCAGGGTTTCAGAGATTGTTTCAGTAGCTGACTTG AAGTTTTTGATTGAGAATTTGGATGAGAAGCTAATTGAGAATGAGAAATGGGAAAACGTTACAAATAAGAGAAACAATCTTCTAGCATATACTGCCAAAT GTTTCAAACCTAAGGATGCTCCTATAAAGTACTTGAGCTTGACGGTGTTTGAAAATTGCACCATGGAGGTGCTAAGGGACTTTTACATGGACAATGAATA CAGAAAGCAGTGGGATAAGACCGTGGTTGAACATGAGCAGCTGCAGGTGGATAGAACTAATGGAACTGAAATTGGTTGCACAATTAAGAAATTTCCTCTC TTGACGCCAAGGGAATATGTTTTAGCATGGAGATTGTGGGAAGGAAAAGATAAAACGTTTTATTGCTTTATTAAGGAATGCGAATACCCTTTAGCTGTAA GACAGAGGAGGTTTGTACGAGTGAAGTTCTATAGATCTGGTTGGAGAATCAGTAAAGTCCCTGGTAGAAACGCTTGTCAGATCACAATGTTTCACCAAGA AGATGCTGGTTTGAATTTGGAGATGGCAAAGTTGGCTTTCTCAAGGGGCATATGGAGCTATGTATGCAAGATGAATGATGCACTACGCAAATACTCTCTG ATGAGTCATCCTTGGACAGGTCCAGCTGTTACTGCAGTGACTCTTATCCAGAAGGTTCCACCTGAACTAGAAACATTGAACACTGTTGTGGATACTCAGG CAACTTCAACATTGATTGCTGCACAGGGACTAGATACTGGTGAAGCCAAAGAGAAGAAATTCCTGAGAAGGCCATCTAAAAAAATTGTCGCAAATGGTCT GCTTCTTCTAGGGGGTGTAATCTTCCTGTCCCGTGGGCACTCTAGCCTTGGTGCCAAAGTTGCCATGGCATATATCCTGACAAAGCTGAGAAAACATGAT GCCTCGTCAGGCCAAGAAAGGGAAAGATGA
AA sequence Show only first row Show all	>Potri.014G001100.1 pacid=42764119 polypeptide=Potri.014G001100.1.p locus=Potri.014G001100 ID=Potri.014G001100.1.v4.1 annot-version=v4.1 MGFFGFNGSSLYSSLKSSMDFWFQNERLNFCYGCAILFVLLCIILYNFSTRLLRFFSSSSSSSSSSSRRHSVSFSSPAASATDIASSNSRVSEIVSVADL KFLIENLDEKLIENEKWENVTNKRNNLLAYTAKCFKPKDAPIKYLSLTVFENCTMEVLRDFYMDNEYRKQWDKTVVEHEQLQVDRTNGTEIGCTIKKFPL LTPREYVLAWRLWEGKDKTFYCFIKECEYPLAVRQRRFVRVKFYRSGWRISKVPGRNACQITMFHQEDAGLNLEMAKLAFSRGIWSYVCKMNDALRKYSL MSHPWTGPAVTAVTLIQKVPPELETLNTVVDTQATSTLIAAQGLDTGEAKEKKFLRRPSKKIVANGLLLLGGVIFLSRGHSSLGAKVAMAYILTKLRKHD ASSGQERER

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13062			Polyketide cyclase/dehydrase a...		Potri.014G001100 [exp]	0	1
AT3G47490			HNH endonuclease (.1.2.3)		Potri.009G004200 [exp]	4.24	0.8164
AT1G24440			RING/U-box superfamily protein...		Potri.010G052700 [exp]	8.83	0.7825
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Potri.001G092500 [exp]	16.58	0.7982
AT1G67340			HCP-like superfamily protein w...		Potri.001G056800 [exp]	18.49	0.7489
AT1G02680		TAF13	TBP-associated factor 13 (.1)		Potri.014G122500 [exp]	19.33	0.7618
AT1G76560		CP12-3	CP12 domain-containing protein...		Potri.005G258400 [exp]	20.97	0.7580
AT5G24690			Protein of unknown function (D...		Potri.001G210500 [exp]	21.63	0.8053
AT5G61760		ATIPK2BETA	ARABIDOPSIS THALIANA INOSITOL ...		Potri.012G111400 [exp]	38.07	0.7520
AT3G10210			SEC14 cytosolic factor family ...		Potri.006G043166 [exp]	38.40	0.7678
AT4G17790			SNARE associated Golgi protein...		Potri.003G094000 [exp]	38.92	0.7305

Compare expression of checked genes

Potri.014G001100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.