Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78980 817 / 0 SRF5 STRUBBELIG-receptor family 5 (.1) AT3G13065 731 / 0 SRF4 STRUBBELIG-receptor family 4 (.1) AT1G53730 618 / 0 SRF6 STRUBBELIG-receptor family 6 (.1.2) AT3G14350 401 / 2e-130 SRF7 STRUBBELIG-receptor family 7 (.1.2.3) AT4G22130 384 / 1e-125 SRF8 STRUBBELIG-receptor family 8 (.1.2) AT4G03390 312 / 2e-95 SRF3 STRUBBELIG-receptor family 3 (.1) AT2G20850 303 / 4e-92 SRF1 STRUBBELIG-receptor family 1 (.1) AT1G11130 296 / 2e-89 SRF9, SCM, SUB STRUBBELIG-RECEPTOR FAMILY 9, SCRAMBLED, Leucine-rich repeat protein kinase family protein (.1) AT5G06820 274 / 1e-81 SRF2 STRUBBELIG-receptor family 2 (.1) AT3G07070 241 / 1e-72 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G002600 [exp] 1132 / 0 AT1G78980 499 / 1e-168 STRUBBELIG-receptor family 5 (.1) Potri.003G073700 [exp] 654 / 0 AT1G53730 575 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Potri.011G010500 [exp] 589 / 0 AT4G22130 916 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Potri.004G005301 [exp] 398 / 7e-129 AT4G22130 906 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Potri.019G103900 [exp] 331 / 2e-102 AT4G03390 801 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.013G144600 [exp] 317 / 3e-97 AT4G03390 783 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.004G037000 [exp] 306 / 2e-93 AT4G03390 645 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.011G045600 [exp] 303 / 2e-92 AT4G03390 617 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.006G190700 [exp] 301 / 8e-92 AT5G06820 696 / 0.0 STRUBBELIG-receptor family 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033333 [exp] 849 / 0 AT1G78980 803 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10034790 [exp] 805 / 0 AT1G78980 768 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10035703 [exp] 793 / 0 AT1G78980 746 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10020030 [exp] 573 / 0 AT4G22130 947 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10015549 [exp] 572 / 0 AT4G22130 972 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10037294 [exp] 558 / 0 AT1G78980 525 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10037464 [exp] 454 / 4e-151 AT1G53730 824 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Lus10018459 [exp] 318 / 2e-98 AT4G03390 594 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10039795 [exp] 317 / 2e-97 AT4G03390 892 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10033711 [exp] 312 / 1e-95 AT4G03390 825 / 0.0 STRUBBELIG-receptor family 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.014G001200.1 pacid=42762638 polypeptide=Potri.014G001200.1.p locus=Potri.014G001200 ID=Potri.014G001200.1.v4.1 annot-version=v4.1 ATGTTTTGGTGTAGGACAATGCACCATAGTCTTGTAGGGTTCTTGATTGTCTCTCTTGGAATTCTGACCACCTTGGTCCATTCAAAGACTGATTCTGATG ATGTTTCGGCTTTGAATGTGATGTTTACAAGCTTAAATTCTCCTTCAAAACTGAGTGGATGGAAATCTAGAGGTGGAGACCCTTGTGGAGACTCATGGGA AGGGATCCAATGCTCAGGCTCATCTGTGACTCAAATAAAGTTATCTGGACTTGGACTTACTGGATCACTGGGTTACCAGCTATCAAACTTGAAATCTGTC ACCTACTTTGATGTGAGCAAAAACAACCTCAATAATGATATACCATACCAGCTTCCTCCCAATACAGTTAACTTAGATCTTTCTAATAATGGCTTCACTG GCAATGTGCCGTACTCAATTTCACAGATGACTAAACTTCAATACCTAAATCTTAATCATAATAAAATCAATGGACAGCTGAGTGATATGTTTCAAAAACT CACTAAACTCAAAACAATGGATCTATCCCACAACTCGATCTCTGGGAATCTGCCTCAAAGTTTTTCTGCACTCAAAAGCCTCAGCACATTTCATTTGCAA GACAATAAATTCACCGGTACCTTAGATGTCCTCGCCGCACTCCCCCTTAAAGATTTGAATGTTGAAGACAACGAGTTCACTGGCTGGGTCCCTGATTCGC TGGAGGGCATTGATAATCTGGAAACCGGGGGGAATTCGTGGTCATCTGGTCATGCTCCTCGTGGTAAATCTAGTTCAGCCCATGAAAAGGGAGGTGGAAA AAAGGGCATGAGTGGACTCGCTATAGCTTTAATAGTAGTTGCTTCACTGGTTGTACTTGTACTTCTCCTATTACTATTTTCAAGAAAAAGGTCCTCTCCA TCTTCAAATTTTCTTGACGAGGAGAAAGGTAGCCGGCATAGAGCATTTACTCCCCTTTCATCACAAGAACTATCCAATCACACGATTGCTTCCATAAAGA AAGAGTTTAAAGAAACTGAGTCACTCAATTCATCTGGTCCGATTGATATAAAGACTTTCCAAAAAGCTGCTTCCATGGGCTACAAGCCTCCACCTTCCAA TTTTTCTCAGTCTATAAATGACAACCAGTTTGCAAGCTGTCTAAATCCAGGAAGAAACACCTCTGTTCGTGCCGTAGCTTTTTCGTTGACAGATTTGCAG ACTGCTACTGGAAATTTTGCACCAGGCCGACTTATTGGTGAGGGTTCCCTTGGTCGCGTCTACAGGGCAAAATATCCTGATGGGAAGGTTTTAGCTGTCA AAACGATTGATTTATCACTTCTTCAAGGTGCAAAGCCAGAGGATTTTTCAGAAATTGTCACAAGCATCTCAAAAGTTCACCATCCGAACATTGCTGAGCT TGCTGGTTATTGTGCAGAACAAGGGCATAGCATGTTGATATATGAATATTTCAGGAATGGCTCACTTCATGGTTTCCTGCATGTAGCAGATGACTACAGT AAACCACTAACTTGGAATACCAGAGTTAGAATAGCTTTGGGCACGGCCCGCGCTGTTGAGTACCTCCATGAAGTTTGTTCTCCATCCTTCATCCACAAGA ACATCAAGTCATCAAATATTTTGCTTGACAATGAACTCAACCCATGTCTTTGCGACTACGGGCTGGAAAACTTTCATCATCGGACAAGCCAAAACCTTGG TGTAGGATACAATGCGCCAGAGTGCACTAAGCCTCCAGCTTATACAATGAAGAGTGATGTTTACAGCTTTGGAGTGGTGATGCTGGAGCTATTGACTGGT CGGAAGCCTTTCGACAGTTCGAGACCCAAATCAGAACAATGTTTGGTCCGATGGGCCACCCCGCAACTGCATGATATTGATTCATTGGAAAAAATGGTTG ACCCTGCATTGCGTGGGCTATACCCTCCGAAGTCAGTATCTCGATTCGCTGATATCATTGCCCTCTGTGCACAGGCGGAGCCTGAATTTCGGCCACCTAT GTCAGAGGTAGTCCAAGCATTGGTGCGATTAGTTCAGCGATCGAGTATGAACTTGAGAGACGATATTACAATTTCTAGTCAGATGGAGGATTCTGACTAC TAG
AA sequence Show only first row Show all	>Potri.014G001200.1 pacid=42762638 polypeptide=Potri.014G001200.1.p locus=Potri.014G001200 ID=Potri.014G001200.1.v4.1 annot-version=v4.1 MFWCRTMHHSLVGFLIVSLGILTTLVHSKTDSDDVSALNVMFTSLNSPSKLSGWKSRGGDPCGDSWEGIQCSGSSVTQIKLSGLGLTGSLGYQLSNLKSV TYFDVSKNNLNNDIPYQLPPNTVNLDLSNNGFTGNVPYSISQMTKLQYLNLNHNKINGQLSDMFQKLTKLKTMDLSHNSISGNLPQSFSALKSLSTFHLQ DNKFTGTLDVLAALPLKDLNVEDNEFTGWVPDSLEGIDNLETGGNSWSSGHAPRGKSSSAHEKGGGKKGMSGLAIALIVVASLVVLVLLLLLFSRKRSSP SSNFLDEEKGSRHRAFTPLSSQELSNHTIASIKKEFKETESLNSSGPIDIKTFQKAASMGYKPPPSNFSQSINDNQFASCLNPGRNTSVRAVAFSLTDLQ TATGNFAPGRLIGEGSLGRVYRAKYPDGKVLAVKTIDLSLLQGAKPEDFSEIVTSISKVHHPNIAELAGYCAEQGHSMLIYEYFRNGSLHGFLHVADDYS KPLTWNTRVRIALGTARAVEYLHEVCSPSFIHKNIKSSNILLDNELNPCLCDYGLENFHHRTSQNLGVGYNAPECTKPPAYTMKSDVYSFGVVMLELLTG RKPFDSSRPKSEQCLVRWATPQLHDIDSLEKMVDPALRGLYPPKSVSRFADIIALCAQAEPEFRPPMSEVVQALVRLVQRSSMNLRDDITISSQMEDSDY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Potri.014G001200 [exp]	0	1
AT5G06370			NC domain-containing protein-r...		Potri.013G043100 [exp]	4.00	0.9901
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Potri.019G004400 [exp]	4.24	0.9905
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Potri.006G158700 [exp]	6.00	0.9877
AT5G63520			unknown protein		Potri.012G100600 [exp]	6.92	0.9880
AT3G13750		BGAL1	beta-galactosidase 1, beta gal...		Potri.003G038500 [exp]	7.74	0.9731	BGAL1.2
					Potri.006G271692 [exp]	8.06	0.9876
AT4G01950		ATGPAT3, GPAT3	glycerol-3-phosphate acyltrans...		Potri.002G192600 [exp]	8.30	0.9843
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.004G179400 [exp]	8.71	0.9852
AT3G21720		ICL	isocitrate lyase (.1)		Potri.017G036900 [exp]	9.48	0.9860	ICL1.1
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Potri.019G004500 [exp]	11.22	0.9879	QLEG.3

Compare expression of checked genes

Potri.014G001200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.