Plant FIBer expression Database

Potri.014G002301 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G005300
[exp]
0 / 1 AT5G48620 91 / 1e-19 Disease resistance protein (CC-NBS-LRR class) family (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.014G002301.1 pacid=42764044 polypeptide=Potri.014G002301.1.p locus=Potri.014G002301 ID=Potri.014G002301.1.v4.1 annot-version=v4.1
ATGCTGCCAACAGCCATCAATCAATTAGAGAGGAAGGGACCCTCATGCAACTATGCTCTGAATCTCATCATTCCAAACACGCTTCGTTTCATCTTTGGGA
AGCGAGGGAGTTTCTTTCTTTCCGGAGAGGCAAATGCGGTTGCTTTGCTTTATGGAAAGAAGAGAAGGGAACGGAAGAAAAGAGAAAAGATGTCTTCACC
AAGGGAAGCAATCAAGAATCTTTGCTTTTCCACACAAGAGTGTAGTGCAGGGCAAGGCAATATTAGAACAGTTCATCTACGGCGACTTCCTCTGTATCTT
CAAGCTTCCTCTGTATCTTCAAGCTTTCCACGCAGTCACAGCTTGACGATTGTCTTTTTTCTTTGTTACTGCTTCACGATGTCTTTTTGGAAATTTATTG
GTATTTAA
AA sequence
>Potri.014G002301.1 pacid=42764044 polypeptide=Potri.014G002301.1.p locus=Potri.014G002301 ID=Potri.014G002301.1.v4.1 annot-version=v4.1
MLPTAINQLERKGPSCNYALNLIIPNTLRFIFGKRGSFFLSGEANAVALLYGKKRRERKKREKMSSPREAIKNLCFSTQECSAGQGNIRTVHLRRLPLYL
QASSVSSSFPRSHSLTIVFFLCYCFTMSFWKFIGI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.014G002301
[exp]
0 1
AT5G06900 CYP93D1 "cytochrome P450, family 93, s... Potri.013G027000
[exp]
4.69 0.8497 IFS1.31
AT5G62000 ARF ORE14, HSS, ARF... ORESARA 14, HLS1 SUPPRESSOR, A... Potri.002G207050
[exp]
12.64 0.8006
AT3G59140 ATMRP14, ABCC10 ATP-binding cassette C10, mult... Potri.003G135800
[exp]
26.77 0.8375
AT1G76560 CP12-3 CP12 domain-containing protein... Potri.002G002700
[exp]
33.91 0.7341
AT1G29740 Leucine-rich repeat transmembr... Potri.011G073166
[exp]
39.87 0.8174
AT5G14700 NAD(P)-binding Rossmann-fold s... Potri.017G110500
[exp]
42.07 0.7956
AT1G23080 PIN7, ATPIN7 ARABIDOPSIS PIN-FORMED 7, Auxi... Potri.014G146800
[exp]
47.62 0.7829 PIN15
AT1G72970 HTH, EDA17 HOTHEAD, embryo sac developmen... Potri.003G039000
[exp]
59.12 0.7821 ACE.1
AT1G25220 WEI7, TRP4, ASB... WEAK ETHYLENE INSENSITIVE7, TR... Potri.008G138800
[exp]
69.79 0.7138
AT1G63640 P-loop nucleoside triphosphate... Potri.015G047400
[exp]
72.66 0.7819

Potri.014G002301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.