Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78950 1246 / 0 ATLUP3 Terpenoid cyclases family protein (.1) AT1G78955 1227 / 0 CAMS1 camelliol C synthase 1 (.1) AT1G78960 1192 / 0 ATLUP2 lupeol synthase 2 (.1) AT1G66960 1142 / 0 ATLUP5 Terpenoid cyclases family protein (.1) AT1G78970 1132 / 0 ATLUP1, LUP1 ARABIDOPSIS THALIANA LUPEOL SYNTHASE 1, lupeol synthase 1 (.1.2) AT1G78500 973 / 0 ATPEN6 Terpenoid cyclases family protein (.1) AT5G36150 972 / 0 ATPEN3 putative pentacyclic triterpene synthase 3 (.1) AT2G07050 965 / 0 CAS1 cycloartenol synthase 1 (.1) AT4G15340 965 / 0 04C11, ATPEN1 pentacyclic triterpene synthase 1 (.1) AT4G15370 956 / 0 BARS1, ATPEN2 PENTACYCLIC TRITERPENE SYNTHASE 2, baruol synthase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G002500 [exp] 1476 / 0 AT1G78950 1244 / 0.0 Terpenoid cyclases family protein (.1) Potri.001G049100 [exp] 1186 / 0 AT1G78955 1141 / 0.0 camelliol C synthase 1 (.1) Potri.007G002100 [exp] 1183 / 0 AT1G78955 1074 / 0.0 camelliol C synthase 1 (.1) Potri.014G001500 [exp] 1166 / 0 AT1G78955 1064 / 0.0 camelliol C synthase 1 (.1) Potri.014G002500 [exp] 1009 / 0 AT1G78955 909 / 0.0 camelliol C synthase 1 (.1) Potri.011G085000 [exp] 966 / 0 AT1G78955 932 / 0.0 camelliol C synthase 1 (.1) Potri.004G132500 [exp] 956 / 0 AT1G78955 935 / 0.0 camelliol C synthase 1 (.1) Potri.006G079300 [exp] 955 / 0 AT2G07050 1333 / 0.0 cycloartenol synthase 1 (.1) Potri.018G148800 [exp] 952 / 0 AT2G07050 1296 / 0.0 cycloartenol synthase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013546 [exp] 1158 / 0 AT1G78955 1081 / 0.0 camelliol C synthase 1 (.1) Lus10016441 [exp] 1137 / 0 AT1G78955 1035 / 0.0 camelliol C synthase 1 (.1) Lus10026079 [exp] 1040 / 0 AT1G78955 1002 / 0.0 camelliol C synthase 1 (.1) Lus10033355 [exp] 998 / 0 AT1G78960 998 / 0.0 lupeol synthase 2 (.1) Lus10032146 [exp] 971 / 0 AT2G07050 1346 / 0.0 cycloartenol synthase 1 (.1) Lus10014538 [exp] 967 / 0 AT2G07050 1350 / 0.0 cycloartenol synthase 1 (.1) Lus10016439 [exp] 947 / 0 AT1G78960 874 / 0.0 lupeol synthase 2 (.1) Lus10016440 [exp] 918 / 0 AT1G78950 838 / 0.0 Terpenoid cyclases family protein (.1) Lus10025684 [exp] 842 / 0 AT2G07050 1198 / 0.0 cycloartenol synthase 1 (.1) Lus10008544 [exp] 735 / 0 AT2G07050 890 / 0.0 cycloartenol synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF00432 [poplar] [flax] Prenyltrans Prenyltransferase and squalene oxidase repeat
Representative CDS sequence Show only first row Show all	>Potri.014G002400.1 pacid=42764485 polypeptide=Potri.014G002400.1.p locus=Potri.014G002400 ID=Potri.014G002400.1.v4.1 annot-version=v4.1 ATGTGGAGGCTAAAGATTGCAGAAGGCAGCAGCAATGACTACTTGTATAGCACAAACAAGTTCGTAGGGAGGCAGACATGGGAGTATGATCCTGAAGGTG GGAGTCCTGAGGAGAGAGCTGAGGTTGAAGAAGCTCGCCTCAATTTCTACAACAATCGTTATGAAGTGAAGCCCAGCGGGGATCTCCTCTGGCGTATGCA GTTTCTCAAGGAGAAGAATTTTAAGCAAACAATAGCTCAAGTGAAAATTGAAGAAGGTGAGGAAATCACATATGAAAAGGCAACGACAACATTGAAGAGG GCTGTCCACTTCTTTTCAGCTCTACAGGCTAGTGACGGCCATTGGCCTGCTGAAAATGCTGGCCCCTTATTCTTCCTCCCTCCCTTGGTAATGTGTTTGT ACATCACGGGACATTTAGATTCTGTATTCTCTGCTGAGCATCGCAGGGAAATCCTCCGTTACATCTATTATCATCAGAATGAAGATGGTGGTTGGGGGCT ACACATTGAGGGCCATAGCACCATGTTCTGCACAGTTCTCAGCTACATTTGTATGCGAATTCTCGGAGAAGGTCCTAATGGTGGTCAAGACAATGCTTGT GCAAGAGCCCGAAAATGGATTCATGAACACGGTACTGTAACACACATACCCTCTTGGGGAAAGACTTGGCTCTCGATTCTTGGTGTATTTGATTGGTCTG GAAGTAATCCAATGCCCCCAGAATTTTGGCTCCTTCCTACTTTTCTTCCTATGCATCCAACAAAAATGTGGTGCTATTGTCGGATGGTTTACATGCCGAT GTCATATCTATATGGGAAAAGGTTTGTTGGTCCTATCACCCCTCTCATTCTGCAGTTGAGAGAAGAACTCTATGCTGAACCTTATAATCAAATCAATTGG AAGAAAACGCGTCATCTGTGTGCCGCGGAGGATCTCTATTATCCCCATCCTTTGATTCAAGATCTGATATGGGATAGTCTCTATGTGTTCACCGAGCCTT TTCTTACTCGTTGGCCCTTCAATAAGTTGGTAAGAAAAAAGGCTCTTGAAGTAACAATGAAGCACATTCACTACGAAGATGAAAACAGTCGTTATATTAC TATTGGATGTGTGGAAAAGGTGTTATGCATGCTTGCGTGCTGGGTTGAAGATCCTGATGGCATTTCTTTCAAGAAACATCTCGCAAGGATCCCGGATTAT TTGTGGGTGGCCGAAGATGGTATGAAAATGCAGAGTTTTGGAAGTCAACAATGGGATACTGGTTTTGCGATTCAGGCCTTGCTTGCTACTAATTTTACAG ATGAAATCGGAGATGTACTCAAGAGAGGACATGACTTCATAAAGAAATCTCAGGTCAAGGACAATCCTTCAGGTGACTTCAAGAGCATGTACCGGCATAT TTCCAAGGGATCGTGGACTTTCTCTGACCAAGATCATGGATGGCAAGTTTCTGATTGCACTGCAGAGGGAATGAAGTGTTGCCTACTTTTCTCGATGATG CCACCAGAAATTGTTGGTCAGAAGCTAGAGCCTGAGAGGCTCTTCGATTCTGTCAACATTCTTCTTTCTCTACAAAGTGAAAATGGAGGTTTAGCAGCGT GGGAGCCAGCTGGAGCTCATAAATGGTTGGAATTACTAAATCCCACAGAGTTTTTCGCTGACATTGTCATTGAGCACGAATATGTTGAGTGCACTGCATC AGCAATCCAAGCATTAGTATTGTTCAAGAAGCTATACCCAGGTCACCGGAAGAAAGAGATTGATAATTTCATAACAAATGCTGTACGATACCTCGAAAGC ATACAAACTCCAGAGGGTGGATGGTATGGAAATTGGGGGGTTTGCTTCACTTATGGTACATGGTTTGCTCTTGGAGGCCTAGCAGCTTCTGGCAAGACTT ACGACAATTGCAAAGCTATGCAAAAAGGTTTGAATTTTCTTCTCAACATACAAAAAGATGATGGAGGTTGGGGAGAGAGCTATTTTTCATGCCCCAATAA GAAATATATACCTCTTGAAGGAAATCGATCAAATTTGGTACATACTGCATGGGCTATGATGGGTCTGATTTATGCCGGGCAGATGGATAGAGACATTACA CCTCTTCACCGAGCAGCCAAGCTGATAATCAATTCGCAATTGGAAGATGGTGATTTTCCCCAGCAGGAAATCACTGGCGTGTTCATGAAAAACTGCATGT TACATTATGCAGCATACAGAAATATCTATCCAATGTGGTCTCTTGCAGAATACCGGAGGCGTGTTCCGTTGCCTTCAACATCCAAGTGA
AA sequence Show only first row Show all	>Potri.014G002400.1 pacid=42764485 polypeptide=Potri.014G002400.1.p locus=Potri.014G002400 ID=Potri.014G002400.1.v4.1 annot-version=v4.1 MWRLKIAEGSSNDYLYSTNKFVGRQTWEYDPEGGSPEERAEVEEARLNFYNNRYEVKPSGDLLWRMQFLKEKNFKQTIAQVKIEEGEEITYEKATTTLKR AVHFFSALQASDGHWPAENAGPLFFLPPLVMCLYITGHLDSVFSAEHRREILRYIYYHQNEDGGWGLHIEGHSTMFCTVLSYICMRILGEGPNGGQDNAC ARARKWIHEHGTVTHIPSWGKTWLSILGVFDWSGSNPMPPEFWLLPTFLPMHPTKMWCYCRMVYMPMSYLYGKRFVGPITPLILQLREELYAEPYNQINW KKTRHLCAAEDLYYPHPLIQDLIWDSLYVFTEPFLTRWPFNKLVRKKALEVTMKHIHYEDENSRYITIGCVEKVLCMLACWVEDPDGISFKKHLARIPDY LWVAEDGMKMQSFGSQQWDTGFAIQALLATNFTDEIGDVLKRGHDFIKKSQVKDNPSGDFKSMYRHISKGSWTFSDQDHGWQVSDCTAEGMKCCLLFSMM PPEIVGQKLEPERLFDSVNILLSLQSENGGLAAWEPAGAHKWLELLNPTEFFADIVIEHEYVECTASAIQALVLFKKLYPGHRKKEIDNFITNAVRYLES IQTPEGGWYGNWGVCFTYGTWFALGGLAASGKTYDNCKAMQKGLNFLLNIQKDDGGWGESYFSCPNKKYIPLEGNRSNLVHTAWAMMGLIYAGQMDRDIT PLHRAAKLIINSQLEDGDFPQQEITGVFMKNCMLHYAAYRNIYPMWSLAEYRRRVPLPSTSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78950		ATLUP3	Terpenoid cyclases family prot...		Potri.014G002400 [exp]	0	1
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Potri.006G219300 [exp]	8.48	0.6560
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Potri.016G074100 [exp]	13.11	0.6321
					Potri.010G023851 [exp]	14.59	0.5333
AT3G11800			unknown protein		Potri.004G146800 [exp]	32.83	0.5893
AT4G34640		ERG9, SQS1	squalene synthase 1 (.1)		Potri.009G123100 [exp]	40.84	0.6037	SQS1.2
AT5G48485		DIR1	DEFECTIVE IN INDUCED RESISTANC...		Potri.009G112553 [exp]	42.74	0.5751
					Potri.019G129532 [exp]	46.76	0.5925
AT5G01720			RNI-like superfamily protein (...		Potri.019G123400 [exp]	54.67	0.5475
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G037500 [exp]	62.12	0.5788
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G037300 [exp]	70.69	0.5814

Compare expression of checked genes

Potri.014G002400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.