Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35390 550 / 0 Leucine-rich repeat protein kinase family protein (.1) AT4G31250 506 / 6e-172 Leucine-rich repeat protein kinase family protein (.1) AT3G20190 416 / 1e-136 Leucine-rich repeat protein kinase family protein (.1) AT1G50610 395 / 9e-129 Leucine-rich repeat protein kinase family protein (.1) AT2G07040 347 / 1e-110 ATPRK2A Leucine-rich repeat protein kinase family protein (.1) AT5G16590 296 / 2e-91 LRR1 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) AT1G10850 268 / 2e-80 Leucine-rich repeat protein kinase family protein (.1) AT5G24100 264 / 2e-79 Leucine-rich repeat protein kinase family protein (.1) AT1G64210 261 / 1e-78 Leucine-rich repeat protein kinase family protein (.1) AT5G20690 253 / 8e-75 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G002000 [exp] 1005 / 0 AT3G20190 437 / 4e-145 Leucine-rich repeat protein kinase family protein (.1) Potri.004G170274 [exp] 745 / 0 AT3G20190 408 / 1e-137 Leucine-rich repeat protein kinase family protein (.1) Potri.018G147300 [exp] 580 / 0 AT5G35390 629 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G078600 [exp] 572 / 0 AT5G35390 660 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G279300 [exp] 564 / 0 AT4G31250 570 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G002600 [exp] 410 / 4e-135 AT3G20190 540 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G130600 [exp] 284 / 8e-87 AT5G16590 649 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.003G136100 [exp] 270 / 2e-81 AT4G23740 769 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G139700 [exp] 265 / 1e-79 AT3G42880 611 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027597 [exp] 462 / 5e-154 AT5G35390 603 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035710 [exp] 447 / 3e-151 AT3G20190 509 / 3e-175 Leucine-rich repeat protein kinase family protein (.1) Lus10037297 [exp] 428 / 3e-146 AT3G20190 420 / 3e-143 Leucine-rich repeat protein kinase family protein (.1) Lus10033339 [exp] 403 / 5e-132 AT3G20190 600 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10026988 [exp] 386 / 3e-125 AT4G31250 606 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10020183 [exp] 375 / 4e-121 AT4G31250 599 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034795 [exp] 360 / 9e-118 AT3G20190 445 / 1e-150 Leucine-rich repeat protein kinase family protein (.1) Lus10022946 [exp] 340 / 4e-107 AT5G35390 593 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10017144 [exp] 323 / 2e-100 AT5G35390 597 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031350 [exp] 279 / 5e-85 AT1G48480 625 / 0.0 receptor-like kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.014G002700.1 pacid=42763091 polypeptide=Potri.014G002700.1.p locus=Potri.014G002700 ID=Potri.014G002700.1.v4.1 annot-version=v4.1 ATGGTTATGGCTGCGCACGTAGCTAAGTTTGCGCGCGCAACCACCTCATCATTAGTCCTCCTTGTTCTTGCTTTTGTGTTATCCATTGTGGTTACATCCT TTGGTTCACCAGATTCCGACGCTCTTTTAAAGTTCAAGGACCAGCTAGCGAACAACGGGGCTATTAATAGCTGGAATCCCTCTGTGAAACCATGTGAATG GGAGAGATCAAATTGGGTCGGTGTGCTGTGTTTGAATGGAAGCATTCGGGGTTTGCAGCTTGAACATATGGCACTCTCCGGCGATATTGATTTGGATGCA CTTGCTCCCTTGCCTTCGTTTAGAACATTAAGCCTTATGGACAACAATTTTGATGGTCCATTGCCTGATTTCAAGAAACTAGGGAAGTTGAAAGCGTTGT ATTTGTCAAATAACCGATTCTCAGGAGACATTCCTGACAATGCATTTGAAGGCATGGGTTCATTAAAGAGACTGTATCTGGCAAATAATCTTCTTACAGG CAAGATTCCTTCATCACTTGCTACCTTGTCTAAGTTGATGGAATTGAAACTTGAAGGAAACCAATTTCAAGGCCAAATACCTAATTTTCAACAGAAGAGT ATGAAGACAGTAAATGTAGCCAACAATGAATTGGAGGGTCCAATCCCAGAAGCCCTAAGCAGATTGAGTCCACATTCATTTGCAGGCAATAAAGGACTAT GTGGACCCCCGTTAGGGCCATGCATACCCTCTCCACCTTCTACCCCCAAATCCAATGGGAAGAAATTTAGCATTCTATACATTGTAATCATTATATTGAT TGTGCTGCTAATGCTAGCAGCCATTGCTTTTGCTTTCCTTCTGTTTTCCCGAAAAAAATGTAAAAGTCGAATACAGAGGACAGCATCATCACCAGAGGAG AACTCCAACAAAATGGTGGCTTCTTATTATAGAGATGTACATCGTGAATTGTCAGAGACTAGTTCTCATGCAAAGAAGGCTGATCATGGAAAGTTGACAT TCCTGAAGGATGACATTGAGAAGTTTGATTTGCAAGACTTGCTTACAGCCTCAGCAGAAGTTTTGGGGAGTGGGACATTTGGATCTTCATATAAGGCAGT TGTCGTTGGACAACCTGTGGTTGTTAAGAGGTATCGGCATATGAGCAATGTGGGGAGAGAAGAGTTCCATGAGCACATGAGAAGGTTAGGGAGGTTGAAA CATCCCAACTTGCTGCCTCTTGCGGCATATTACAATAGGAGGGATGAGAAGCTTTTGGTTACAGAGTTCGCTGAGAATGGTAGCCTGGCTAGTCACCTTC ATGGAAATCATTCACCGGAAGAAGATGGACTTCATTGGCACATCCGCTTGAAAATCGTCAAAGGAGTAGCCAGGGGTTTGGCTTTTCTCTACAATGAGCT TCCTATAATTGCTCCTCATGGACACCTAAAATCTTCCAACGTGCTCCTAGACGAGTCGTTCGAGCCTCTCTTGACAGATTATGCTCTAAGACCCGTGGTC AACCCTGAACATGCCCACATGTTCATGATGGCTTACAAGTCACCTGAGTATGCACAACAAAGCCGGACATCAAACAAGACAGATATATGGAGTTTTGGCA TTTTAATACTGGAGATGTTAACTGGCAAGTTCCCTGAGAACTATCTAACACCATGTTATAACAGTGATGCAGACTTAGCAACTTGGGTTAATAACATGGT GAAGGAAAAGCGAACAAGTGAAGTGTTTGATAAGGAAATAGTTGGAACAAAATATAGCAAAGGAGAAATGATAAAGCTTTTGAAGATTGGATTAAGTTGC TGTGAAGAGGATGTAGAGAGAAGGTTGGACATTAAGGAAGTTGTCGAGAAGATTGATGTACTGAAAGAAGGAGACGAAGATGAAGAACTTTACGGGAGTG AAGGGAATGCATATAGTGTTAGAGGGAATGACCAGGAAGGATATTCCTTCACATTGGATCGATGA
AA sequence Show only first row Show all	>Potri.014G002700.1 pacid=42763091 polypeptide=Potri.014G002700.1.p locus=Potri.014G002700 ID=Potri.014G002700.1.v4.1 annot-version=v4.1 MVMAAHVAKFARATTSSLVLLVLAFVLSIVVTSFGSPDSDALLKFKDQLANNGAINSWNPSVKPCEWERSNWVGVLCLNGSIRGLQLEHMALSGDIDLDA LAPLPSFRTLSLMDNNFDGPLPDFKKLGKLKALYLSNNRFSGDIPDNAFEGMGSLKRLYLANNLLTGKIPSSLATLSKLMELKLEGNQFQGQIPNFQQKS MKTVNVANNELEGPIPEALSRLSPHSFAGNKGLCGPPLGPCIPSPPSTPKSNGKKFSILYIVIIILIVLLMLAAIAFAFLLFSRKKCKSRIQRTASSPEE NSNKMVASYYRDVHRELSETSSHAKKADHGKLTFLKDDIEKFDLQDLLTASAEVLGSGTFGSSYKAVVVGQPVVVKRYRHMSNVGREEFHEHMRRLGRLK HPNLLPLAAYYNRRDEKLLVTEFAENGSLASHLHGNHSPEEDGLHWHIRLKIVKGVARGLAFLYNELPIIAPHGHLKSSNVLLDESFEPLLTDYALRPVV NPEHAHMFMMAYKSPEYAQQSRTSNKTDIWSFGILILEMLTGKFPENYLTPCYNSDADLATWVNNMVKEKRTSEVFDKEIVGTKYSKGEMIKLLKIGLSC CEEDVERRLDIKEVVEKIDVLKEGDEDEELYGSEGNAYSVRGNDQEGYSFTLDR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20190			Leucine-rich repeat protein ki...		Potri.014G002700 [exp]	0	1
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.003G195150 [exp]	2.44	0.8383
AT5G44265			Bifunctional inhibitor/lipid-t...		Potri.002G012300 [exp]	4.24	0.6916
AT1G40390			DNAse I-like superfamily prote...		Potri.014G186733 [exp]	11.31	0.6306
AT5G12000			Protein kinase protein with ad...		Potri.006G225300 [exp]	12.04	0.5743
					Potri.011G164750 [exp]	12.48	0.6630
					Potri.004G151301 [exp]	12.48	0.6824
AT1G14200			RING/U-box superfamily protein...		Potri.011G119900 [exp]	24.37	0.5824
					Potri.001G007232 [exp]	25.09	0.5588
					Potri.013G094950 [exp]	30.39	0.6000
AT4G18770	MYB	ATMYB98	myb domain protein 98 (.1)		Potri.015G077700 [exp]	31.22	0.5480

Compare expression of checked genes

Potri.014G002700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.