Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 352 / 5e-103 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 328 / 5e-93 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G59218 200 / 4e-52 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58848 200 / 4e-52 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G53350 197 / 2e-51 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G07040 196 / 5e-51 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT5G35450 189 / 5e-49 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58807 189 / 7e-49 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G50180 186 / 3e-48 NB-ARC domain-containing disease resistance protein (.1) AT3G50950 186 / 3e-48 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G003832 [exp] 1912 / 0 AT3G14470 370 / 1e-109 NB-ARC domain-containing disease resistance protein (.1) Potri.004G170232 [exp] 1904 / 0 AT3G14470 367 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Potri.014G002900 [exp] 1865 / 0 AT3G14470 397 / 2e-119 NB-ARC domain-containing disease resistance protein (.1) Potri.014G003600 [exp] 1797 / 0 AT3G14470 388 / 2e-115 NB-ARC domain-containing disease resistance protein (.1) Potri.014G005600 [exp] 1603 / 0 AT3G14470 362 / 3e-107 NB-ARC domain-containing disease resistance protein (.1) Potri.014G012000 [exp] 1592 / 0 AT3G14470 367 / 7e-109 NB-ARC domain-containing disease resistance protein (.1) Potri.014G007600 [exp] 1566 / 0 AT3G14470 381 / 3e-114 NB-ARC domain-containing disease resistance protein (.1) Potri.004G169800 [exp] 1559 / 0 AT3G14470 393 / 1e-118 NB-ARC domain-containing disease resistance protein (.1) Potri.014G005400 [exp] 1550 / 0 AT3G14460 338 / 1e-95 LRR and NB-ARC domains-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039509 [exp] 457 / 4e-139 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 438 / 1e-133 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 426 / 1e-128 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10007261 [exp] 416 / 5e-124 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005321 [exp] 414 / 9e-123 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 413 / 1e-122 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 397 / 5e-116 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10016316 [exp] 387 / 2e-114 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 378 / 6e-111 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10022351 [exp] 358 / 2e-103 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF05729 [poplar] [flax] NACHT NACHT domain
Representative CDS sequence Show only first row Show all	>Potri.014G003200.1 pacid=42762801 polypeptide=Potri.014G003200.1.p locus=Potri.014G003200 ID=Potri.014G003200.1.v4.1 annot-version=v4.1 ATGACAGCAGAGCTCTATCTTACGTTTGCCATGGAGGAGACTTTGACAAGGGTCAGTTCCATAGCTGCTGAATGGATCAAACTTACTTGGGGATTGGAGG GACAGCTGCGAAAGCTCAAGCAGTCCTTGATCATGATCAGAGATGTGCTCCCAGATGCAGCAAGAAGGGCAGTCATAGACGATTCTGTGAAGGTTTGGCT GGAGAAACTACAAGATGTAGCTTACGATGCTGAAGATGTTCTAGACGAGGTTGCTTATGAGATTCTCCGTAAAGACCAAAAGAAGGGAAAGGTACGTGAC TGCTTTTCACTGCACAACCCTGTTGCATTCCGTCTGAATATGCGTAAAAAAGTTAAGGAGATCAATGGATCACTGGATGAGATCTGGAAAGATGCAGCCG GATTTGGGCTGGGAATTGCATCTCTACATGTAGAGAGTGCTCCTGAAGTTATCCGGGATATAGACCGAGAGACAGATTCCTTGCTTGGAAGCTCAGAAGT TGTAGTAGGAAGAGACAATGATATCTCTAAAATCATGGAATTGCTGATTGGTTCGATCGGTCAACAAGTTCTGTCTGTTGTCCCTATTGTGGGGATGGCA GGTCTTGGAAAGACTACCATAGCAAAGAAAATTTGTCAATTAGCGAGGGAGAAAAACCATTTTGATGTGACTCTATGGGTTTGTGTCTCTGATGATTTCA GTAAAAGGAGGATATTAGGAGAGATGTTGCAAAATGTTGATGAAACTACAAGTATGTTGAGCAATCTACATGCAATTATGGCAAAGCTTAAGAAAAAGCT GGAAAAGAAAACACTTCTTCTTGTTCTTGATGATGTGTGGAATGAAGACTATGATAAGTGGGATGATTTGAAGGAGGGATTGTTAAAAATTAACAGCATG AATGGGAATGCTGTTGTTGTTACAACCCGCAGTAAGAAAGTAGCAGACATGATGGAGACTTCTCCTGGGATTCAGCACGAGCCAGGGAGACTTTCAGATG ATCAATGTTGGTCCATTATCAAGCAAACGGTGAGCAGGGGTGGAGGAGAAACAATAGCTTCAGACTTGGAGTCTATTGGAATAGAGATTGCAAAGAAATG TGGAGGGATTCCATTGCTTGCTAAAGTTATGGGAGGAACTCTTCACGGAAAGCAGGCACAGGAGTGGCAGTCAATTCTAAACATTAATATTTGGGATTGT CAGGATGGAGATAAAGTTTTGCGCATTTTTGATTACTTGTCATCGCCATCACTGAAAAAATGTTTTGCATACTGTTCTATTTTTCCTAAAGATTTTGAAA TTGAAAGGGAAGAGCTGGTTCAACTTTGGATGGCTGATGGTTTTCTCAGGCCATCAAATGGGAGGATGGAAGACGAAGGCAACAAGTATTTCAATGACTT GCTTGCAAATTCCTTTTTCCAAGATGTTAAAAGGAATGAGTGTGAGATCGTAACAAGTTGCAAGATGCATGATCTAGTGCATGATCTTGCATTACAGGTC TCAAAATCAGAAGCGTTAAATCTGGAGGAGGATTCGGCTGTTGATGGTGCATCTCATATTCGTCGTCTAAATCTCATATCTCATGGGGATGTTGAGGCAG CATTTCCAACGGTTGATGCTAGAAAATTACGAACTGTTTTCTCAATGGTTGATGTATTCAATGGGTCTTGGAAATTCAAAAGCTTGAGAACTCTCAAATT GCGACGGTCTGATATCACAGAGTTACCAGATTCAATTTGCAAGCTGAGACATTTAAGATATCTTGATGTCTCATGTACCAGTATCAGAGTATTGCCAGAA TCCATCACCGAGCTCTACCACTTGGAAACATTAAGATTCACTGATTGCAAGTTACTAGAAAAGCTTCCCAAGAAAATGAGGAATTTAGTGAGCTTGAGAC ATCTTCATTTTGATGATCCAAAGCTAGTGCCAGCTGAGGTGAGACTCTTAACACGCCTTCAAACTCTGCCTTTTTTTGTTGTGGGTCCAGATCATATGGT TGAAGAGCTGGGATGTTTGAAAGAACTAAGAGGAGCATTGAAGATATGCAAGCTTGAGCAAGTTAGAGACAGAGAAGAAGCTGAGAAGGCAAGACTGCGT AGAAAAGGAATGAACAAATTGGTGCTTGAATGGAGTGATGATAAAGGTAACATCGGTGTCAATAACGAGGATGTGCTGGAAGGCCTGCAACCTCACCCAG ACATAAGTAGCTTGACAATTGAGGGTTATGGAGGTGAATATTTCTCATCATGGATATTGCAACTCAATAATCTGACGGTGCTGAGATTGAATGGCTGCAG CAAGTTGAGGCAACTCCCAACACTTGGATGTCTTCCTCGCCTTAAGATTCTAAAGATGAGTGGAATGCCTAATGTGAAATGTATAGGCAATGAGTTCTAT AGCAGCAGTGGCAGTGCAGCTGGACTATTTCCAGCACTAGAAGAACTCACTCTGTCCAAAATGGATGGTCTTGAAGAATGGATGGTACCAGGTGGAGAAG GTGATCTAGTATTTCCTTGTCTTGAAGAGTTGTGCATTGAGGAGTGTCGCCAGTTGAGGCAACTCCCAACACTTGGATGTCTTCCTCGCCTTAAGATTCT AAAGATGAGTGGAATGCGTAATGTGAAATGTATAGGCAATGAGTTCTATAGTAGCGGTGACAACGCAGTAGTACTGTTTCCAACACTAAAAGAACTCACT TTGTGGGATATGGATGGTCTTGAAGAATGGATGGTAGCAGGTGGAGAAGTTGTTGCAGTATTTCCTCGTCTTGAAGAGTTGAGCATTAAGAGATGTGGCA AGTTGAAAAGCATTCCGCTATGTCATCTTTCATCTCTTGTACGATTTGAAATTATAGGATGTGAGGAACTGAGTTATTCGTCTGGTGAGTTTCATGGCTT CACGTCTCTTCAAATTTTAACGATACGTAGTTGTTCAAAGCTGACATCCACTCCAAGCGTAAAACACTTCACAAATCTAGTGGAAATGAGCATACGGTGG TGCCGTGAGTTGATCTCAATTCCTGGTGATTTTCGAGAATTGAAATATTCTTTGAAGAAATTAGATATTCTGGGATGTAAATTGGTAGCTCTTCCAAGCG GACTACAATATTGCGCATCTCTAGAGGAATTGCAGATATTGTTTTGCAGTGAGCTTATCCATATCAGTAATTTACAAGAATTGTCTTCGCTTCGAAGATT AAAGATAATGTATTGTGAGAAGCTCATCAGTTTTGATTGGCATGGTTTACGACTATTGCGTTCTCTTGTTTATTTAGAAATCAGTTGGTGTCGGAGTTTG AGTGATATCCCAGAGGATGATTGCTTAGGCAGCCTCACCCAACTGAAGGAACTAAGAATCGGTGGTTTCTCAAAGGAGCTGGAGGCTTTTTCTGCAGGAC TTACAAACTCAATTCAACACTTGAGTGGGTCCCTCAAATCCCTATTCATATATGGATGGGATAAACTGAAGAGTGTACCCCGCCAACTTCAACACCTCAC TGCCCTCGAGACATTGCATATAAGTGGTTTCAATGGAGTGGAGTTCGAGGAAGCATTGCCCGAATGGTTGGCCAACCTTTCTTCTCTTCAATCTCTTACT ATTTGGAATTGCTACAATCTCAAGTGTCTGCCAAGCTCAAGAACAGCCATTCAACGCCTCTCCAAATTAAAACATTTGGAGATTTATGGATGTCCACATC TCTTGGCAAATTGTAGAGAGGAGAATGACTCTGAGTGGCCCAAGATTTCTCATATCCCATCAATCAAGATAGAGGGTACACGTGTACAGCCGGACCTCGA AGACTGA
AA sequence Show only first row Show all	>Potri.014G003200.1 pacid=42762801 polypeptide=Potri.014G003200.1.p locus=Potri.014G003200 ID=Potri.014G003200.1.v4.1 annot-version=v4.1 MTAELYLTFAMEETLTRVSSIAAEWIKLTWGLEGQLRKLKQSLIMIRDVLPDAARRAVIDDSVKVWLEKLQDVAYDAEDVLDEVAYEILRKDQKKGKVRD CFSLHNPVAFRLNMRKKVKEINGSLDEIWKDAAGFGLGIASLHVESAPEVIRDIDRETDSLLGSSEVVVGRDNDISKIMELLIGSIGQQVLSVVPIVGMA GLGKTTIAKKICQLAREKNHFDVTLWVCVSDDFSKRRILGEMLQNVDETTSMLSNLHAIMAKLKKKLEKKTLLLVLDDVWNEDYDKWDDLKEGLLKINSM NGNAVVVTTRSKKVADMMETSPGIQHEPGRLSDDQCWSIIKQTVSRGGGETIASDLESIGIEIAKKCGGIPLLAKVMGGTLHGKQAQEWQSILNINIWDC QDGDKVLRIFDYLSSPSLKKCFAYCSIFPKDFEIEREELVQLWMADGFLRPSNGRMEDEGNKYFNDLLANSFFQDVKRNECEIVTSCKMHDLVHDLALQV SKSEALNLEEDSAVDGASHIRRLNLISHGDVEAAFPTVDARKLRTVFSMVDVFNGSWKFKSLRTLKLRRSDITELPDSICKLRHLRYLDVSCTSIRVLPE SITELYHLETLRFTDCKLLEKLPKKMRNLVSLRHLHFDDPKLVPAEVRLLTRLQTLPFFVVGPDHMVEELGCLKELRGALKICKLEQVRDREEAEKARLR RKGMNKLVLEWSDDKGNIGVNNEDVLEGLQPHPDISSLTIEGYGGEYFSSWILQLNNLTVLRLNGCSKLRQLPTLGCLPRLKILKMSGMPNVKCIGNEFY SSSGSAAGLFPALEELTLSKMDGLEEWMVPGGEGDLVFPCLEELCIEECRQLRQLPTLGCLPRLKILKMSGMRNVKCIGNEFYSSGDNAVVLFPTLKELT LWDMDGLEEWMVAGGEVVAVFPRLEELSIKRCGKLKSIPLCHLSSLVRFEIIGCEELSYSSGEFHGFTSLQILTIRSCSKLTSTPSVKHFTNLVEMSIRW CRELISIPGDFRELKYSLKKLDILGCKLVALPSGLQYCASLEELQILFCSELIHISNLQELSSLRRLKIMYCEKLISFDWHGLRLLRSLVYLEISWCRSL SDIPEDDCLGSLTQLKELRIGGFSKELEAFSAGLTNSIQHLSGSLKSLFIYGWDKLKSVPRQLQHLTALETLHISGFNGVEFEEALPEWLANLSSLQSLT IWNCYNLKCLPSSRTAIQRLSKLKHLEIYGCPHLLANCREENDSEWPKISHIPSIKIEGTRVQPDLED

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14470			NB-ARC domain-containing disea...		Potri.014G003200 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Potri.004G170700 [exp]	1.00	0.9562
AT1G78060			Glycosyl hydrolase family prot...		Potri.005G168400 [exp]	1.73	0.8873
AT4G27220			NB-ARC domain-containing disea...		Potri.018G136500 [exp]	5.47	0.8630
AT2G24130			Leucine-rich receptor-like pro...		Potri.005G030626 [exp]	5.65	0.8659
AT4G27220			NB-ARC domain-containing disea...		Potri.018G135600 [exp]	6.92	0.8555
AT1G21200	Trihelix		sequence-specific DNA binding ...		Potri.002G068700 [exp]	7.34	0.8142
AT2G35610		XEG113	xyloglucanase 113 (.1)		Potri.004G235800 [exp]	9.16	0.8545
AT4G27220			NB-ARC domain-containing disea...		Potri.018G145540 [exp]	10.19	0.8372
AT3G14470			NB-ARC domain-containing disea...		Potri.012G123400 [exp]	10.58	0.8270
AT2G36430			Plant protein of unknown funct...		Potri.007G013800 [exp]	11.09	0.7990

Compare expression of checked genes

Potri.014G003200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.