Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46730 49 / 2e-06 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 45 / 2e-05 LRR and NB-ARC domains-containing disease resistance protein (.1) AT5G43470 45 / 3e-05 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58410 44 / 6e-05 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G50180 43 / 0.0001 NB-ARC domain-containing disease resistance protein (.1) AT1G58602 42 / 0.0002 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT5G48620 42 / 0.0002 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G46530 41 / 0.0004 RPP13 RECOGNITION OF PERONOSPORA PARASITICA 13, NB-ARC domain-containing disease resistance protein (.1) AT5G35450 41 / 0.0004 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G07040 40 / 0.0009 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G002900 [exp] 339 / 6e-109 AT3G14470 397 / 2e-119 NB-ARC domain-containing disease resistance protein (.1) Potri.014G003832 [exp] 328 / 6e-105 AT3G14470 370 / 1e-109 NB-ARC domain-containing disease resistance protein (.1) Potri.004G170000 [exp] 276 / 4e-96 AT3G14470 47 / 1e-06 NB-ARC domain-containing disease resistance protein (.1) Potri.004G170300 [exp] 289 / 6e-92 AT3G14470 401 / 3e-123 NB-ARC domain-containing disease resistance protein (.1) Potri.014G005300 [exp] 261 / 6e-87 AT5G48620 91 / 1e-19 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.004G170400 [exp] 275 / 2e-85 AT3G14470 401 / 3e-121 NB-ARC domain-containing disease resistance protein (.1) Potri.003G025904 [exp] 272 / 3e-85 AT3G14470 265 / 1e-73 NB-ARC domain-containing disease resistance protein (.1) Potri.013G041800 [exp] 272 / 4e-85 AT3G14470 325 / 2e-94 NB-ARC domain-containing disease resistance protein (.1) Potri.014G003600 [exp] 274 / 5e-85 AT3G14470 388 / 2e-115 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005218 [exp] 76 / 1e-15 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10007261 [exp] 69 / 2e-13 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039509 [exp] 67 / 9e-13 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10016316 [exp] 66 / 2e-12 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10028279 [exp] 66 / 3e-12 AT3G14470 337 / 5e-99 NB-ARC domain-containing disease resistance protein (.1) Lus10002736 [exp] 64 / 8e-12 AT3G14470 317 / 1e-98 NB-ARC domain-containing disease resistance protein (.1) Lus10042117 [exp] 64 / 1e-11 AT3G14470 354 / 2e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10039540 [exp] 61 / 1e-10 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10006794 [exp] 61 / 2e-10 AT3G14470 264 / 2e-78 NB-ARC domain-containing disease resistance protein (.1) Lus10022900 [exp] 61 / 2e-10 AT3G14470 350 / 2e-104 NB-ARC domain-containing disease resistance protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G003350.1 pacid=42764628 polypeptide=Potri.014G003350.1.p locus=Potri.014G003350 ID=Potri.014G003350.1.v4.1 annot-version=v4.1 ATGGAGGAGACTTTGACAAGGGTCAGTTCCATAGCTGCTGAAGGGATCAGACTTGCTTGGGGATTGGAGGGACAGCTACGAAAGCTCAAGCAGTCCTTGA TCATGATCAGAGATGTGCTCCAAGATGCAGCAAGAAGGTCAGTCACAGACGATTCTGTGAAGGGTTGGCTGGAGAAACTACAAGATGTAGCTTACGATGC TGAAGATGTTCTAGACGAGTTTGCTTATGAGATTCTCCGAAAAGACCAAAAGAAGGGAAAGGTACGTGACTGCTTTTCACTCCACAACCCTGTCGCATTC CGTCTGAATATGGGTCAAAAAGTTAAGGAGATCAATGGAGCACTGGATGAAATTCGAAAAGATGCAGCTGTATTTCAATTGACATCTCTACATGTAGATA GAGCTCAAGAAGTTAGCTGGGATCAAGATCGACAGACAGATTCCTTCATTGACAGCTCAGAAATTGTAGGAAGGGAGGATGATGTTTCTATAGTTATGGA TATGCTGACTGTAGCAATTGTCAACATTTTTTGTCAACCTTTCTCCAACCACCATGACTTTTGTCATTGTAGTAGTTGGTTCTGCACATGGGTTGCTGTC AATGCTTCTCCATTCTCCTATAAAGAGAGAGACGGGAGAGAGTGCAGTGTAGAGAAGGCATAA
AA sequence Show only first row Show all	>Potri.014G003350.1 pacid=42764628 polypeptide=Potri.014G003350.1.p locus=Potri.014G003350 ID=Potri.014G003350.1.v4.1 annot-version=v4.1 MEETLTRVSSIAAEGIRLAWGLEGQLRKLKQSLIMIRDVLQDAARRSVTDDSVKGWLEKLQDVAYDAEDVLDEFAYEILRKDQKKGKVRDCFSLHNPVAF RLNMGQKVKEINGALDEIRKDAAVFQLTSLHVDRAQEVSWDQDRQTDSFIDSSEIVGREDDVSIVMDMLTVAIVNIFCQPFSNHHDFCHCSSWFCTWVAV NASPFSYKERDGRECSVEKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14470			NB-ARC domain-containing disea...		Potri.014G003350 [exp]	0	1
AT1G02860		BAH1, NLA	nitrogen limitation adaptation...		Potri.002G205400 [exp]	2.00	0.8609
AT4G27190			NB-ARC domain-containing disea...		Potri.001G429890 [exp]	5.38	0.8847
AT1G12680		PEPKR2	phosphoenolpyruvate carboxylas...		Potri.017G048400 [exp]	7.48	0.7919
AT4G27190			NB-ARC domain-containing disea...		Potri.001G432680 [exp]	8.06	0.8355
AT4G27190			NB-ARC domain-containing disea...		Potri.001G445700 [exp]	8.83	0.8530
AT4G27220			NB-ARC domain-containing disea...		Potri.001G425500 [exp]	10.48	0.8381
AT5G47020			unknown protein		Potri.001G148300 [exp]	11.48	0.8101
AT4G38210		ATHEXPALPHA1.23...	EXPANSIN 20, expansin A20 (.1)		Potri.004G208300 [exp]	12.16	0.8029
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Potri.001G023900 [exp]	12.84	0.8612
AT3G26320		CYP71B36	"cytochrome P450, family 71, s...		Potri.010G049200 [exp]	13.63	0.8133

Compare expression of checked genes

Potri.014G003350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.