Plant FIBer expression Database

Potri.014G003451 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G170350
[exp]
48 / 3e-08 ND /
Potri.003G111900
[exp]
0 / 1 AT2G30590 154 / 5e-44 WRKY DNA-binding protein 21 (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.014G003451.1 pacid=42763966 polypeptide=Potri.014G003451.1.p locus=Potri.014G003451 ID=Potri.014G003451.1.v4.1 annot-version=v4.1
ATGGAGCAGAAGAAGAAACTTACTTTGCAGTTGCAAACAGCTCTAGCTTTGAAAATACTGTTGTCCTATGGTTTGATTTGGTTGTTAAATACATGCTGGG
AGATTGAAATGCAATTTTGGAGTGATTGCGTTCCCCTTTATAAGCCAAAGATCCTCCAGACTCCTTTCTACATATGTTCTTGCGGGGCATCCCCTCCTGC
TGCTGCATTTAGTCTCCTTAGAAACCAAAGAATTTATATTAATGGGATGCCAAGGCTTAAACACTTGAACAAGTTCTCCCATTCTTTGAAGCTCAAACTC
TCACCTTCTAACTCAAGTTTTCGCAGACCCCATGTTAAGGTATGTTTTTACAGGTGA
AA sequence
>Potri.014G003451.1 pacid=42763966 polypeptide=Potri.014G003451.1.p locus=Potri.014G003451 ID=Potri.014G003451.1.v4.1 annot-version=v4.1
MEQKKKLTLQLQTALALKILLSYGLIWLLNTCWEIEMQFWSDCVPLYKPKILQTPFYICSCGASPPAAAFSLLRNQRIYINGMPRLKHLNKFSHSLKLKL
SPSNSSFRRPHVKVCFYR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.014G003451
[exp]
0 1
AT2G02250 ATPP2-B2 phloem protein 2-B2 (.1) Potri.018G016000
[exp]
4.00 0.9437
AT3G14610 CYP72A7 "cytochrome P450, family 72, s... Potri.005G126600
[exp]
4.89 0.9350
AT5G26594 ARR24 response regulator 24 (.1) Potri.001G051000
[exp]
7.07 0.9004
AT3G06080 TBL10 TRICHOME BIREFRINGENCE-LIKE 10... Potri.005G208301
[exp]
8.00 0.9254
AT1G50410 SNF2 domain-containing protein... Potri.014G005701
[exp]
9.00 0.9250
AT4G26090 RPS2 RESISTANT TO P. SYRINGAE 2, NB... Potri.001G435000
[exp]
10.00 0.9336
Potri.001G432333
[exp]
13.85 0.9207
AT5G52270 SNARE-like superfamily protein... Potri.012G140600
[exp]
14.56 0.8722
Potri.015G036450
[exp]
14.96 0.9149
AT5G40270 HD domain-containing metal-dep... Potri.009G147800
[exp]
15.49 0.9226

Potri.014G003451 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.