Plant FIBer expression Database

Potri.014G004100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G20000 480 / 1e-172 TOM40 translocase of the outer mitochondrial membrane 40 (.1)
AT1G50400 413 / 6e-146 Eukaryotic porin family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G000200
[exp]
644 / 0 AT3G20000 482 / 4e-173 translocase of the outer mitochondrial membrane 40 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017368
[exp]
528 / 0 AT3G20000 457 / 2e-163 translocase of the outer mitochondrial membrane 40 (.1)
Lus10010163
[exp]
525 / 0 AT3G20000 455 / 1e-162 translocase of the outer mitochondrial membrane 40 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0193 MBB PF01459 Porin_3 Eukaryotic porin
Representative CDS sequence
>Potri.014G004100.1 pacid=42763954 polypeptide=Potri.014G004100.1.p locus=Potri.014G004100 ID=Potri.014G004100.1.v4.1 annot-version=v4.1
ATGGCGGGGTTCGTAGCTCCGGGTACAACGTTGTTAGGCAATGAAGCTACATCAGAAGCAGCCAAAAAGATCAATGAGGTTCACAAAAAAGTTGATTACT
TGAACCTTCCTTGTCCAATCCCCTATGAAGAACTCCATCGTGAAGCACTCATGTCTTTGAAGCCTGAGTATTTTGAGGGGATGCGTTTTGATTTTACCAA
AGGACTGAATCAGAAATTTTCTCTCAGTCATAGTGTGATGATGGGGCCTATGGAAATTCCTTCTCAATCTTCAGAAGCCATCAAAATCCCTACTGCTCAC
TATGAGTTTGGTGCTAACTTTATAGACCAAAAGACAATGCTTATCGGGAGGGTTTTGACCGATGGGAGAGTAAATGCAAGAGTGAAGTGTGATTTGACTG
ATGATCTTGCTTTAAAGGCTAATGCTCAGCTTACAAATGAGCCTCACATGTCCCATGTCATGTTGAACTTCGATTACAAGGGTAAAGACTACAGGAGCCA
GTTGCAACTAGGAAATGGTGCCTTATTTGGTGCCAGTTACATTCAGAGTGTGACCCCTCATATGTCTTTGGGTGCTGAAGTATTTTGGGCTGGTCAGCAT
CGAAAATCTGGTGTTGGATATGCTGGTCGGTATGAGACGGACAAGATGGTTGCTGCAGGGCAAGTTGCTAGCACTGGATTGATGGCTTTGAGCTACGTGC
AGAAGGTTTCTGAGAAGGTTTCACTAGCAACAGACTTCATGTACAATTACTTATCAAAGGATGTGACTGCTAGTGTTGGCTATGATTATGCCCTCAGACA
AGCCCGTTTGAGAGGAAAGATTGATTCCAATGGATGCACATCCGCCTTCTTGGAAGAACGCTTGAATATGGGTCTCAATTTCGTTCTTTCTGCAGAGTTG
GATCATAAGAAAAAAGATTACAAATTTGGATTCGGGTTGACAGTGGGCTAA
AA sequence
>Potri.014G004100.1 pacid=42763954 polypeptide=Potri.014G004100.1.p locus=Potri.014G004100 ID=Potri.014G004100.1.v4.1 annot-version=v4.1
MAGFVAPGTTLLGNEATSEAAKKINEVHKKVDYLNLPCPIPYEELHREALMSLKPEYFEGMRFDFTKGLNQKFSLSHSVMMGPMEIPSQSSEAIKIPTAH
YEFGANFIDQKTMLIGRVLTDGRVNARVKCDLTDDLALKANAQLTNEPHMSHVMLNFDYKGKDYRSQLQLGNGALFGASYIQSVTPHMSLGAEVFWAGQH
RKSGVGYAGRYETDKMVAAGQVASTGLMALSYVQKVSEKVSLATDFMYNYLSKDVTASVGYDYALRQARLRGKIDSNGCTSAFLEERLNMGLNFVLSAEL
DHKKKDYKFGFGLTVG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G20000 TOM40 translocase of the outer mitoc... Potri.014G004100
[exp]
0 1
AT1G33140 PGY2 PIGGYBACK2, Ribosomal protein ... Potri.001G453900
[exp]
3.16 0.9626
AT5G59240 Ribosomal protein S8e family p... Potri.017G110000
[exp]
4.89 0.9399
AT5G60390 GTP binding Elongation factor ... Potri.008G042500
[exp]
6.70 0.9543 ADR12.1
AT1G33140 PGY2 PIGGYBACK2, Ribosomal protein ... Potri.001G454000
[exp]
6.92 0.9552
AT1G27400 Ribosomal protein L22p/L17e fa... Potri.012G096600
[exp]
8.12 0.9463 Pt-RPL17.1
AT3G09630 Ribosomal protein L4/L1 family... Potri.016G084400
[exp]
9.16 0.9427 Pt-RPL4.2
AT5G35530 Ribosomal protein S3 family pr... Potri.006G222100
[exp]
9.79 0.9557
AT5G11880 Pyridoxal-dependent decarboxyl... Potri.004G157500
[exp]
10.95 0.9105
AT3G11830 TCP-1/cpn60 chaperonin family ... Potri.009G157400
[exp]
12.96 0.9092
AT1G74270 Ribosomal protein L35Ae family... Potri.008G059400
[exp]
13.07 0.9395

Potri.014G004100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.