Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37670 825 / 0 NAGS2 N-acetyl-l-glutamate synthase 2 (.1.2) AT2G22910 813 / 0 NAGS1 N-acetyl-l-glutamate synthase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G005300 [exp] 1051 / 0 AT4G37670 847 / 0.0 N-acetyl-l-glutamate synthase 2 (.1.2) Potri.018G001600 [exp] 80 / 6e-16 AT3G57560 417 / 1e-146 N-acetyl-l-glutamate kinase (.1) Potri.006G280100 [exp] 79 / 1e-15 AT3G57560 416 / 4e-146 N-acetyl-l-glutamate kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012093 [exp] 885 / 0 AT2G22910 813 / 0.0 N-acetyl-l-glutamate synthase 1 (.1) Lus10019262 [exp] 864 / 0 AT4G37670 799 / 0.0 N-acetyl-l-glutamate synthase 2 (.1.2) Lus10011548 [exp] 817 / 0 AT4G37670 763 / 0.0 N-acetyl-l-glutamate synthase 2 (.1.2) Lus10030889 [exp] 67 / 1e-11 AT3G57560 450 / 1e-159 N-acetyl-l-glutamate kinase (.1) Lus10030601 [exp] 46 / 4e-05 AT3G57560 181 / 4e-55 N-acetyl-l-glutamate kinase (.1) Lus10012094 [exp] 43 / 0.0003 AT2G22905 50 / 2e-08 Expressed protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00696 [poplar] [flax] AA_kinase Amino acid kinase family CL0257 [poplar] [flax] Acetyltrans PF13508 [poplar] [flax] Acetyltransf_7 Acetyltransferase (GNAT) domain
Representative CDS sequence Show only first row Show all	>Potri.014G005000.1 pacid=42762978 polypeptide=Potri.014G005000.1.p locus=Potri.014G005000 ID=Potri.014G005000.1.v4.1 annot-version=v4.1 ATGGTAACTCCTTATTCAAGCCACTGCCTTTCTCTACAAAATCACCACTTGCTTCCATTTTTATCCGCAAAGCCGCTCTTTTTTTTCAGCAAGAATCTCC ATGTAAAAAACCCACCAAGAAGGTTTTCTCCTTTTTTAAGTAGTAGTAGTAATGAGGGAGGTTGGAGTAGCAAGTTAGCAAGTCGGCGAAAGGTGTTTGG GGAGACAGGGAGTGGGAGTATCGAAGAGGGTTATAATTCGGTGGAAGACAAGCAATTTGTCAAGTGGTTTCGTGAGGCATGGCCTTACTTGTGGGCTCAT AGAGGAAGTACTTTTGTTGTTATTATTTCTGGTGAAACTGTTTCTAGTCCTTTCTTGGATTCCATTTTGAAGGATATAGCATTTCTGCATCACCTGGGGA TTAAGTTTGTGTTAGTCCCAGGAACTCATGTCCAAATTGACAGTCTTTTGTCTGAGAGAGGGCATGAGCCTAAGTATGTTGGTCAATACAGAATTACTGA TTCTGAAGCTTTGGCTGCCTCAATGGAGGCTGCGGGGAAGATTCGTATCATGATAGAGACCAAACTTTCTCCTGGACCTTCCATATGCAATATTCGTCGA CATGGTGACAGTAGTCGTTGGCATGATGTTGGTGTCAGTGTTGCTAGTGGTAATTTTCTTGCAGCCAAGAGACGAGGAGTTGTTGAAGGAGTTGATTTTG GAGCAACTGGTGAAGTCAAGAAAGTAGATGTTACTCGAATGCGTGAAAGGCTTGATGGTGGTTGTATAGTGGTGTTAAGCAACTTGGGATATTCAAGCTC TGGAGAAGTCTTAAATTGCAACACATACGAAGTTGCTACAGCTTGTGCCTTGGCTATTGGGGCGGATAAGCTTATTTGCATCATAGATGGTCCAATTCTG GATGAGAGCGGACACCTTATTCGCTTCTTGACTCTAGAAGAAGCAGACATGTTGATTCGTAAGCGGGCTAAGCAAAGTGAGATAGCTGCTCATTATGTCA AAGCTGTTGGTGAAGAAGATCGTACTTTTCTTGTACACAATGATTCTGTTGGAATTGATGCATCCTTACAGAATGGGAAGTCTCTCAGTGGAAGGCACAA TGCAACCTTTCACAATGGTGTTGGGTTTGACAATGGAAATGGACTATGGTCTGGGGAACAAGGTTTTGCTATTGGAGGTGAAGAGCGACAAAGTCGATTA AATGGTTATCTTTCAGAATTGGCTGCTGCAGCTTTTGTTTGCAAAGGTGGCGTTCAAAGAGTACATCTTTTAGATGGCACAATTGGCGGAGTTCTGCTGT TAGAACTGTTTAAAAGAGATGGAATGGGTACAATGGTGGCTAGTGATCTTTACGAAGGAACTAGGATGGCCAGAGCGACAGATCTTGCAGGAATAAGACA AATTATACAGCCGTTAGAAGAATCTGGCACATTGGTTCGGAGAACTGATGAAGAGCTGCTTAAAGCATTGGATTTCTTTGTTGTTGTGGAAAGAGAAGGT CAAATTATCGCTTGTGCTGCTCTTTTTCCTTTCTTTGAAGAAAAGTGTGGAGAAGTTGCTGCCATTGCAGTTTCTCCTGAATGCCGGGGACAAGGGCAGG GAGATAAATTACTTGATTTCATTGAGAGGAGAGCCTCTTCCCTTAGATTGGAAACACTTTTCCTGCTTACAACTCGCACTGCAGATTGGTTCACAAGGCG CGGCTTCTCAGAGTGTTCCATTCAATTGATACCGGAGGAAAGAAGGAAGAAGATTAATCTATCCCGTAATTCGAAGTATTATACAAAGAAGTTGCTACCT GATACTAGTGGAATTAGTGTTGATAGAGCATTCAGTTAA
AA sequence Show only first row Show all	>Potri.014G005000.1 pacid=42762978 polypeptide=Potri.014G005000.1.p locus=Potri.014G005000 ID=Potri.014G005000.1.v4.1 annot-version=v4.1 MVTPYSSHCLSLQNHHLLPFLSAKPLFFFSKNLHVKNPPRRFSPFLSSSSNEGGWSSKLASRRKVFGETGSGSIEEGYNSVEDKQFVKWFREAWPYLWAH RGSTFVVIISGETVSSPFLDSILKDIAFLHHLGIKFVLVPGTHVQIDSLLSERGHEPKYVGQYRITDSEALAASMEAAGKIRIMIETKLSPGPSICNIRR HGDSSRWHDVGVSVASGNFLAAKRRGVVEGVDFGATGEVKKVDVTRMRERLDGGCIVVLSNLGYSSSGEVLNCNTYEVATACALAIGADKLICIIDGPIL DESGHLIRFLTLEEADMLIRKRAKQSEIAAHYVKAVGEEDRTFLVHNDSVGIDASLQNGKSLSGRHNATFHNGVGFDNGNGLWSGEQGFAIGGEERQSRL NGYLSELAAAAFVCKGGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYEGTRMARATDLAGIRQIIQPLEESGTLVRRTDEELLKALDFFVVVEREG QIIACAALFPFFEEKCGEVAAIAVSPECRGQGQGDKLLDFIERRASSLRLETLFLLTTRTADWFTRRGFSECSIQLIPEERRKKINLSRNSKYYTKKLLP DTSGISVDRAFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37670		NAGS2	N-acetyl-l-glutamate synthase ...		Potri.014G005000 [exp]	0	1
AT3G45890		RUS1	ROOT UVB SENSITIVE 1, Protein ...		Potri.001G193300 [exp]	2.82	0.8808
AT1G23180			ARM repeat superfamily protein...		Potri.010G110200 [exp]	3.46	0.9001
AT5G08520	MYB		Duplicated homeodomain-like su...		Potri.005G087700 [exp]	3.74	0.8720
AT2G28605			Photosystem II reaction center...		Potri.005G068500 [exp]	4.47	0.8947
AT3G20540		PolIB, POLGAMMA...	polymerase I B, polymerase gam...		Potri.001G421300 [exp]	5.19	0.8803
AT4G01030			pentatricopeptide (PPR) repeat...		Potri.014G097000 [exp]	6.00	0.9032
AT3G53170			Tetratricopeptide repeat (TPR)...		Potri.009G058300 [exp]	6.00	0.8994
AT5G07900			Mitochondrial transcription te...		Potri.004G222000 [exp]	8.77	0.8283
AT4G34020		AtDJ1C	DJ-1 homolog C, Class I glutam...		Potri.009G100900 [exp]	10.39	0.8923
AT5G27410			D-aminoacid aminotransferase-l...		Potri.005G039100 [exp]	11.09	0.8470	Pt-AAT.3

Compare expression of checked genes

Potri.014G005000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.