Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70210 181 / 1e-54 ATCYCD1;1, CYCD1;1 CYCLIN D1;1 (.1) AT5G65420 156 / 1e-45 CYCD4;1 CYCLIN D4;1 (.1.2.3) AT2G22490 147 / 2e-41 CYCD2;1, ATCYCD2;1 Cyclin D2;1 (.1.2) AT5G10440 141 / 1e-39 CYCD4;2 cyclin d4;2 (.1) AT4G34160 141 / 3e-39 CYCD3;1 CYCLIN D3;1 (.1) AT3G50070 139 / 3e-38 CYCD3;3 CYCLIN D3;3 (.1) AT5G67260 134 / 2e-36 CYCD3;2 CYCLIN D3;2 (.1) AT4G37630 120 / 2e-31 CYCD5;1 cyclin d5;1 (.1.2) AT4G03270 92 / 4e-21 CYCD6;1 Cyclin D6;1 (.1) AT5G02110 75 / 4e-15 CYCD7;1 CYCLIN D7;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G005700 [exp] 488 / 1e-175 AT1G70210 178 / 1e-53 CYCLIN D1;1 (.1) Potri.009G086700 [exp] 204 / 2e-63 AT1G70210 168 / 3e-49 CYCLIN D1;1 (.1) Potri.001G292300 [exp] 204 / 4e-63 AT2G22490 178 / 1e-52 Cyclin D2;1 (.1.2) Potri.008G146600 [exp] 167 / 3e-49 AT1G70210 370 / 3e-128 CYCLIN D1;1 (.1) Potri.010G095200 [exp] 164 / 3e-48 AT1G70210 374 / 6e-130 CYCLIN D1;1 (.1) Potri.002G103500 [exp] 155 / 1e-44 AT2G22490 262 / 3e-85 Cyclin D2;1 (.1.2) Potri.005G157800 [exp] 149 / 1e-42 AT5G65420 228 / 2e-73 CYCLIN D4;1 (.1.2.3) Potri.014G005550 [exp] 141 / 3e-42 AT1G70210 78 / 2e-18 CYCLIN D1;1 (.1) Potri.002G123000 [exp] 134 / 2e-36 AT4G34160 280 / 1e-91 CYCLIN D3;1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029194 [exp] 167 / 2e-49 AT1G70210 367 / 2e-127 CYCLIN D1;1 (.1) Lus10010709 [exp] 166 / 1e-48 AT1G70210 375 / 4e-130 CYCLIN D1;1 (.1) Lus10019825 [exp] 136 / 6e-37 AT4G34160 332 / 4e-112 CYCLIN D3;1 (.1) Lus10014089 [exp] 134 / 2e-36 AT4G34160 332 / 2e-112 CYCLIN D3;1 (.1) Lus10024796 [exp] 128 / 2e-34 AT4G34160 231 / 4e-73 CYCLIN D3;1 (.1) Lus10018739 [exp] 127 / 5e-34 AT4G34160 237 / 3e-75 CYCLIN D3;1 (.1) Lus10011507 [exp] 119 / 5e-31 AT5G67260 343 / 7e-117 CYCLIN D3;2 (.1) Lus10019317 [exp] 119 / 8e-31 AT5G67260 338 / 4e-115 CYCLIN D3;2 (.1) Lus10027874 [exp] 117 / 1e-29 AT4G34160 226 / 6e-70 CYCLIN D3;1 (.1) Lus10039738 [exp] 104 / 2e-25 AT4G03270 243 / 1e-78 Cyclin D6;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [poplar] [flax] Cyclin PF00134 [poplar] [flax] Cyclin_N Cyclin, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.014G005900.1 pacid=42762466 polypeptide=Potri.014G005900.1.p locus=Potri.014G005900 ID=Potri.014G005900.1.v4.1 annot-version=v4.1 ATGTCTGTCTCGACAGATGTTTCCAGTACTCCTATTAACTTGTACTGCAACGAAACACCTGGTGTTGCACTTTGCTCCAGTAGTGATGATGACATTAGTG AAACCAGTAGCCTTTCATCTACAGAGTTCCCAGTTGATATCGATGAGAGCTACATTGATAATATCCTCCTTTCTGAGCTTCATCAAATGCCAGCAACCGA GCTAATAACTCGATTTCTAGAGATTTCACAAGTTGGTTCAGCTCATCAAGATGCACTGAATTGGATGTTAAAGGCGCATGCTTCCTACCGGTTTAAGCCT GAAACAGCCTATCTCTCTGTCAGCTATTTTCATTGCTTCATACTATCTCGTCCATTGCAGCATGGTAAAGGATGGCCCCTGCAGCTATTAGCAGTAGCAT GCCTATCTCTAGCAGCAAAAATGGAGGAAACAAGAGTCCCATCTCTTTTAGACATACAGCTATTGGAGCCCAGATTTTTATTCAAACCAAGCACAGTTCA AAGGATGGAGCTTTTGGTCATGAGCTGTCTGAAGTGGCGATTACACATCATTACACCTTTCTCTTTTCTGCATTATTTCGTTGCAAAGCTTCCACATCTC AGCCCCAGAAGTAAAAATTTTATTTTGACTCATTCATCCGATCTTATCATCAGCACATGTAGAGTGATTAAAATCTTGGCTTATACTCCATCAACAATAG CAGCAGCTGCAGTGCTATGGGTGACTAATCAAACTATTGATGGCCCCAAATTAGAGTGCTTTCACAGTAGAATGGACAAGGAAATGGTGAGAGGATGCTA CAACCTTATTAGGCAAAGCATGCCTCAACGGTGTCGTGGCGAGGTACTTGATGCAGCCATGCCGGGGAATTGCCATGCAAAGAGATGCTGCGGGAAGGGT TTCAAGTCAAGCCAAGACATGTCTCCAAACAAGTGCTGA
AA sequence Show only first row Show all	>Potri.014G005900.1 pacid=42762466 polypeptide=Potri.014G005900.1.p locus=Potri.014G005900 ID=Potri.014G005900.1.v4.1 annot-version=v4.1 MSVSTDVSSTPINLYCNETPGVALCSSSDDDISETSSLSSTEFPVDIDESYIDNILLSELHQMPATELITRFLEISQVGSAHQDALNWMLKAHASYRFKP ETAYLSVSYFHCFILSRPLQHGKGWPLQLLAVACLSLAAKMEETRVPSLLDIQLLEPRFLFKPSTVQRMELLVMSCLKWRLHIITPFSFLHYFVAKLPHL SPRSKNFILTHSSDLIISTCRVIKILAYTPSTIAAAAVLWVTNQTIDGPKLECFHSRMDKEMVRGCYNLIRQSMPQRCRGEVLDAAMPGNCHAKRCCGKG FKSSQDMSPNKC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G70210		ATCYCD1;1, CYCD...	CYCLIN D1;1 (.1)		Potri.014G005900 [exp]	0	1
AT5G28910			unknown protein		Potri.013G047600 [exp]	3.00	0.6121
AT1G79070			SNARE-associated protein-relat...		Potri.011G144400 [exp]	21.07	0.6062
AT3G18440		ATALMT9	aluminum-activated malate tran...		Potri.010G127400 [exp]	38.15	0.6167
AT1G80160		GLYI7	glyoxylase I 7, Lactoylglutath...		Potri.005G117000 [exp]	44.49	0.6098
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.003G134500 [exp]	46.95	0.5833
					Potri.001G098901 [exp]	84.55	0.5780

Compare expression of checked genes

Potri.014G005900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.