Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37680 632 / 0 HHP4 heptahelical protein 4 (.1.2) AT4G38320 600 / 0 HHP5 heptahelical protein 5 (.1) AT2G24150 252 / 7e-81 HHP3 heptahelical protein 3 (.1) AT4G30850 251 / 3e-80 HHP2 heptahelical transmembrane protein2 (.1.2) AT5G20270 224 / 2e-70 HHP1 heptahelical transmembrane protein1 (.1) AT2G40710 176 / 7e-55 Haemolysin-III related integral membrane protein (.1) AT4G38290 148 / 1e-43 Haemolysin-III related integral membrane protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G005800 [exp] 748 / 0 AT4G37680 611 / 0.0 heptahelical protein 4 (.1.2) Potri.018G124754 [exp] 310 / 7e-103 AT5G20270 384 / 4e-133 heptahelical transmembrane protein1 (.1) Potri.T124407 [exp] 309 / 9e-103 AT5G20270 385 / 2e-133 heptahelical transmembrane protein1 (.1) Potri.018G102400 [exp] 278 / 1e-90 AT4G30850 374 / 5e-129 heptahelical transmembrane protein2 (.1.2) Potri.006G064400 [exp] 268 / 1e-86 AT5G20270 369 / 2e-127 heptahelical transmembrane protein1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011713 [exp] 659 / 0 AT4G37680 585 / 0.0 heptahelical protein 4 (.1.2) Lus10025206 [exp] 657 / 0 AT4G37680 584 / 0.0 heptahelical protein 4 (.1.2) Lus10010605 [exp] 458 / 6e-161 AT4G37680 464 / 7e-164 heptahelical protein 4 (.1.2) Lus10038120 [exp] 216 / 4e-67 AT5G20270 377 / 3e-131 heptahelical transmembrane protein1 (.1) Lus10008057 [exp] 217 / 8e-67 AT5G20270 394 / 6e-137 heptahelical transmembrane protein1 (.1) Lus10036605 [exp] 168 / 3e-48 AT4G30850 259 / 3e-84 heptahelical transmembrane protein2 (.1.2) Lus10035823 [exp] 102 / 6e-23 AT4G30920 776 / 0.0 leucyl aminopeptidase 2, Cytosol aminopeptidase family protein (.1) Lus10007709 [exp] 52 / 7e-08 ND 47 / 2e-10
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0192 [poplar] [flax] GPCR_A PF03006 [poplar] [flax] HlyIII Haemolysin-III related
Representative CDS sequence Show only first row Show all	>Potri.014G006000.1 pacid=42762708 polypeptide=Potri.014G006000.1.p locus=Potri.014G006000 ID=Potri.014G006000.1.v4.1 annot-version=v4.1 ATGGATGGTGTAAAACATACGAGTGAGGATTCAGAGCTGATATCTGAAACAATTGAGAAACTCCCAGTAAGTGTTTCAATGGAAGGGAAAGGGAAGAGAT TATGGAAGAAAGTTAAGTACCAGCTTGTAGAGTACAATTCCTTGCCCGCATATTTAAGGGACAATGAGTTCATTTTGGGCCATTACCGTTCTGAATGGCC TTTGAAGCAGGTTTTGCTCAGTGTCTTCACTATCCACAATGAGACATTGAATGTTTGGACGCATTTGATCGGGTTTTTCCTTTTCCTGTCCTTGACCATA TATACTGCAATGAAGGTTCCAAAGGTGGTTGATCTTCATTCTCTACAACTACCTGAGGTGTTGAAAGCTGATTTGCACAAATTGCAAGAATGCCTTCCCT CGTTACCCAACATGCCTGATCTGCACAAACTTAGCGGAGAGTTGAAGAGTACATTGCCTTCAATTGATTTGCTTCCATCATTCTCAAGATGGCATGTCAT GGACCTTCTATACAATTGTTTGCCTGAGCGGTTCTCACATAGCAACCAGACTGATGTGTGTGTTCTGCGTAGCATGAAGGAGGATGTTGCAAACATGATA GCACCCCTGATGCTGAGGCCAATCACACGTTGGCCATTCTTTGCTTTCTTGGGTGGGGCTATGTTTTGCTTGCTAGCTAGCAGCACTTGCCACCTTCTCT CTTGCCACTCCGAGCGCTTAACATACATCCTGCTTAGGCTTGACTATGCTGGAATTGCAGCCCTCATTTCCACCTCGTTTTACCCTCCTGTGTACTACTC CTTCATGTGCAATCCTTTTTTCTGTAACCTGTACTTGGGGTTCATAACTCTCTTGGGGGTTGCCACAATATTGGTTTCACTACTGCCAGTGTTTCAAAAC CCTGAATTCCGTACCGTTCGTGCATCCCTTTTCCTTGGCATGGGTTTGTCTGGGGTGGCGCCTATTCTGCACAAGCTTATCTTGTTCTGGCATCAGCCTG AGGCCCTTCACACAACTGGCTATGAGGTCCTGATGGGGATTTTCTATGGAATCGGAGCACTGATTTATGCCACAAGGATTCCAGAAAGATGGATGCCTGG GAAATTTGACATTGCAGGGCACAGTCACCAACTTTTCCATGTATTGGTAGTGGCTGGAGCTTATACTCATTATCAGGCAGGGCTGGTTTACCTCAAGTGG CGAGACCTTGAAGGATGTCGAGGAACGTAA
AA sequence Show only first row Show all	>Potri.014G006000.1 pacid=42762708 polypeptide=Potri.014G006000.1.p locus=Potri.014G006000 ID=Potri.014G006000.1.v4.1 annot-version=v4.1 MDGVKHTSEDSELISETIEKLPVSVSMEGKGKRLWKKVKYQLVEYNSLPAYLRDNEFILGHYRSEWPLKQVLLSVFTIHNETLNVWTHLIGFFLFLSLTI YTAMKVPKVVDLHSLQLPEVLKADLHKLQECLPSLPNMPDLHKLSGELKSTLPSIDLLPSFSRWHVMDLLYNCLPERFSHSNQTDVCVLRSMKEDVANMI APLMLRPITRWPFFAFLGGAMFCLLASSTCHLLSCHSERLTYILLRLDYAGIAALISTSFYPPVYYSFMCNPFFCNLYLGFITLLGVATILVSLLPVFQN PEFRTVRASLFLGMGLSGVAPILHKLILFWHQPEALHTTGYEVLMGIFYGIGALIYATRIPERWMPGKFDIAGHSHQLFHVLVVAGAYTHYQAGLVYLKW RDLEGCRGT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37680		HHP4	heptahelical protein 4 (.1.2)		Potri.014G006000 [exp]	0	1
AT4G19860			alpha/beta-Hydrolases superfam...		Potri.015G121000 [exp]	3.46	0.8217
AT3G55640			Mitochondrial substrate carrie...		Potri.010G197400 [exp]	8.48	0.7772
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.002G121400 [exp]	12.32	0.8534	Pt-IFS1.51
AT5G53120		SPMS, SPDS3, AT...	spermidine synthase 3 (.1.2.3....		Potri.012G002600 [exp]	17.43	0.7438
AT1G16670			Protein kinase superfamily pro...		Potri.011G112000 [exp]	26.73	0.7961
AT3G56310			Melibiase family protein (.1.2...		Potri.019G056700 [exp]	34.29	0.7509
AT5G19540			unknown protein		Potri.018G080900 [exp]	37.32	0.7853
AT2G25620		AtDBP1	DNA-binding protein phosphatas...		Potri.006G059600 [exp]	40.17	0.7889
AT2G41640			Glycosyltransferase family 61 ...		Potri.006G048500 [exp]	43.08	0.7468
AT3G23360			Protein phosphatase 2C family ...		Potri.008G168400 [exp]	81.54	0.7601

Compare expression of checked genes

Potri.014G006000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.