Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37710 40 / 0.0002 VQ motif-containing protein (.1) AT2G22880 39 / 0.0005 VQ motif-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G006200 [exp] 204 / 3e-67 AT4G37710 / VQ motif-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011555 [exp] 48 / 5e-07 AT4G37710 47 / 2e-07 VQ motif-containing protein (.1) Lus10019270 [exp] 45 / 7e-06 AT4G37710 47 / 4e-07 VQ motif-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05678 [poplar] [flax] VQ VQ motif
Representative CDS sequence Show only first row Show all	>Potri.014G006400.2 pacid=42763127 polypeptide=Potri.014G006400.2.p locus=Potri.014G006400 ID=Potri.014G006400.2.v4.1 annot-version=v4.1 ATGGAAACATATAATTCTTCTTCTTCTTCTTCTTTGACATCATCATCAATGTACTCGAAGCAATTCTCAGAAGAAACAAAGGGCTTGAAAATGCCACAAT CTTACCATTCATCACTTCATTCAATCCGGAGAACCCAGATGAAACCATGGAAGAAACCAATAGCACCATTGCCACCAACCCCACCAAGAGTTTACAAGGT GGATCCTATAAACTTCCGAGACCTTGTTCAGAAGCTCACTGGTGCACCCAAGAAAGAGCCAGAGCCAGAGCCGCAGTCAAGGCTACAAAGCGTGGCACCT CCTCCACTTGATCTCTTTACACCAACATTATTTGGTAGAGAAAGAGAGATCGCAGCAGTACCCTTACAGCTCCTTCCTTCGCCCGCACAAACCCCACTGT CTGCCAGCTTGTACCAGGAGTTGATGTATGAATCATTGGATGCAAAACCCGAGAGGATGCCAGAAAGTATAATGTCTGTATCAAGTTCCCTCGAATTGAA TCTGTCACCATCTTATCATGCTTGGTGTTCCTATCCTCTTCTGAGCCCAGGAACTCTTTCCAGTCTTGAGCAAGGCACCGTGCTTTAG
AA sequence Show only first row Show all	>Potri.014G006400.2 pacid=42763127 polypeptide=Potri.014G006400.2.p locus=Potri.014G006400 ID=Potri.014G006400.2.v4.1 annot-version=v4.1 METYNSSSSSSLTSSSMYSKQFSEETKGLKMPQSYHSSLHSIRRTQMKPWKKPIAPLPPTPPRVYKVDPINFRDLVQKLTGAPKKEPEPEPQSRLQSVAP PPLDLFTPTLFGREREIAAVPLQLLPSPAQTPLSASLYQELMYESLDAKPERMPESIMSVSSSLELNLSPSYHAWCSYPLLSPGTLSSLEQGTVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37710			VQ motif-containing protein (....		Potri.014G006400 [exp]	0	1
AT1G28130		GH3.17	Auxin-responsive GH3 family pr...		Potri.001G069000 [exp]	1.00	0.9767	7
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Potri.006G227400 [exp]	5.47	0.9594	Pt-CWINV.1
AT5G12380		ANNAT8	annexin 8 (.1)		Potri.003G200700 [exp]	7.74	0.9373	ANN1.1
AT2G35770		SCPL28	serine carboxypeptidase-like 2...		Potri.008G041700 [exp]	7.93	0.9303
AT4G35160			O-methyltransferase family pro...		Potri.004G050500 [exp]	8.48	0.9354	FOMT1,OOMT2.17
AT1G65870			Disease resistance-responsive ...		Potri.016G060700 [exp]	11.61	0.9357
AT2G30210		LAC3	laccase 3 (.1)		Potri.013G152700 [exp]	11.95	0.9289
					Potri.016G124800 [exp]	13.49	0.8755
AT1G78780			pathogenesis-related family pr...		Potri.001G389400 [exp]	17.32	0.9204
AT5G66816			unknown protein		Potri.005G136800 [exp]	18.65	0.8494

Compare expression of checked genes

Potri.014G006400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.