Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65890 541 / 0 ACR1 ACT domain repeat 1 (.1.2) AT1G76990 399 / 2e-135 ACR3 ACT domain repeat 3 (.1.2.3.4.5) AT1G69040 394 / 1e-133 ACR4 ACT domain repeat 4 (.1.2) AT5G25320 380 / 3e-127 ACT-like superfamily protein (.1) AT2G03730 374 / 1e-125 ACR5 ACT domain repeat 5 (.1.2) AT3G01990 348 / 9e-116 ACR6 ACT domain repeat 6 (.1) AT1G12420 337 / 3e-111 ACR8 ACT domain repeat 8 (.1) AT4G22780 327 / 1e-107 ACR7 ACT domain repeat 7 (.1) AT2G36840 45 / 0.0001 ACR10 ACT domain repeats 10, ACT-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G006500 [exp] 837 / 0 AT5G65890 567 / 0.0 ACT domain repeat 1 (.1.2) Potri.T124144 [exp] 401 / 2e-136 AT1G69040 721 / 0.0 ACT domain repeat 4 (.1.2) Potri.008G109200 [exp] 401 / 6e-136 AT1G69040 723 / 0.0 ACT domain repeat 4 (.1.2) Potri.010G138600 [exp] 398 / 4e-135 AT1G69040 743 / 0.0 ACT domain repeat 4 (.1.2) Potri.005G185600 [exp] 395 / 4e-134 AT1G76990 709 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Potri.002G074800 [exp] 395 / 6e-134 AT1G76990 676 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Potri.006G256500 [exp] 395 / 1e-133 AT5G25320 611 / 0.0 ACT-like superfamily protein (.1) Potri.018G025500 [exp] 393 / 9e-133 AT5G25320 604 / 0.0 ACT-like superfamily protein (.1) Potri.001G060100 [exp] 389 / 1e-131 AT1G69040 505 / 7e-178 ACT domain repeat 4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011715 [exp] 657 / 0 AT5G65890 520 / 0.0 ACT domain repeat 1 (.1.2) Lus10028646 [exp] 413 / 5e-141 AT1G76990 699 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Lus10018943 [exp] 413 / 4e-138 AT1G76990 686 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Lus10003136 [exp] 401 / 3e-136 AT1G69040 520 / 0.0 ACT domain repeat 4 (.1.2) Lus10011329 [exp] 397 / 8e-135 AT1G69040 515 / 0.0 ACT domain repeat 4 (.1.2) Lus10036827 [exp] 386 / 2e-130 AT1G69040 702 / 0.0 ACT domain repeat 4 (.1.2) Lus10041543 [exp] 367 / 6e-123 AT3G01990 605 / 0.0 ACT domain repeat 6 (.1) Lus10012550 [exp] 367 / 7e-123 AT3G01990 612 / 0.0 ACT domain repeat 6 (.1) Lus10019191 [exp] 219 / 6e-68 AT1G69040 434 / 2e-152 ACT domain repeat 4 (.1.2) Lus10006662 [exp] 199 / 1e-58 AT4G22780 483 / 4e-170 ACT domain repeat 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0070 [poplar] [flax] ACT PF01842 [poplar] [flax] ACT ACT domain CL0070 [poplar] [flax] ACT PF13740 [poplar] [flax] ACT_6 ACT domain
Representative CDS sequence Show only first row Show all	>Potri.014G006700.5 pacid=42762938 polypeptide=Potri.014G006700.5.p locus=Potri.014G006700 ID=Potri.014G006700.5.v4.1 annot-version=v4.1 ATGGAGATAACAGCTTATAAGCCTTATATCGATGCAGAGTTTGAATCCCTCATGGAAAGAATTTATCCTCCAAGAGTTTGCGTAGACAATGAAACATACC AAGATTGCACTCTTATTAAGGTTGACAGTGCAAACAAGCAGGGGATTCTATTAGAGATGGTCCAAGTCTTGACAGATCTTGACCTTGTTATATCCAAATC ATATATTTCCTCTGATGGGGGGTGGTTCATGGAAGGTCAGTGCCCACCAACCAAAATAAAACACCATGCTTGCATCACTCCTCTGTTGTTCCACGTGACT GACCAGCTTGGGAGCAAACTCACTGACGATAGCCTCATACTTTACATTCAGCAGGCACTGTGTGTAGATAGGAGAAGAGGGGTATCGAAGGAATCGCAAA CTTCTCTCCACAGAGAAGTTAGGCCACCATACGCGTCAACAGATCACACGGCCATGGAGATAACTGGGACTGACCGACCAGGTCTGCTCTCCGAAATATC AGCGGTGCTTTCCAAGTTGGAGTGCCATGTCACGGCTTCCGCGGTATGGACCCACAATAATAGAGCAGCTTCCATAATCTACATGGAAGATGGGTTCCAA GGAGGACCCATCACAGATCCAAAGAGACTAGCACATGTGCAAGAGCAGTTGGAGAATGTTGTGGAGGCTCATCATGGGGTGGGGGAGAGGAGGAGCGTGC GACTGACAGCTCCAGCACCAGGACAAAAGACCCACACGGGGCGGAGGCTCCACCAGTTGATGTACGCCAACATGGACTACGAACCATGTCAGGGATGCAA TGGAGGGGGTTTAGCACATAGAAATAACTGTACTAAAATTCATGTGTCTATTGATTCTTGTAAGGAGAAGGGGTACTCTGTGGTGAATGTCAGGAGTAGA GACAGGCCAAAACTCTTGTTTGATACACTCTGCGCTCTAACTGATATGCAGTATGTTGTGTTCCATGCTGCGGTTAGCGCTAAGGGAACCATGGCCGATC AGGAGTACTTCATTCGGCAGCAGGATGGGTGCACTTTGGACACAGAGAGCGAAAGGCATAAACTAACCCAATGCTTGATTGCTGCCATTGAGCGCAGAGT ATCCCATGGAGCGAGGCTGGACATTTGCACTCACAACCGAATGGGACTCCTCTCGAATGTGACAAGGGCGTTCCGAGAGAATGGGCTATCAATCTCAAGG GCTGAGATTGGAACAAATGGTGATAGGGCAGTTGGTTCCTTCTACGTTACTGATGCTTCAGGATATGAAGCAAATCCACAAGCAATAGATGAGGTAAAAA AAGAGATGGGAGGATCTGTAGTGGTAGTTAACAAATCACCAGGCTGGACACCAAAAACCTCCAAAACTCCCTCGGTAGGTAGTGTTAGCAGAAATAGCAG CGGCAGCATAGATGAAGAAAAGCCACGGCTCTCTCCAGGAAGCCTATTCTGGTCACAGCTTAAGAGGCTTTCAAGCAATTTCAGCTCCATACGATCATGA
AA sequence Show only first row Show all	>Potri.014G006700.5 pacid=42762938 polypeptide=Potri.014G006700.5.p locus=Potri.014G006700 ID=Potri.014G006700.5.v4.1 annot-version=v4.1 MEITAYKPYIDAEFESLMERIYPPRVCVDNETYQDCTLIKVDSANKQGILLEMVQVLTDLDLVISKSYISSDGGWFMEGQCPPTKIKHHACITPLLFHVT DQLGSKLTDDSLILYIQQALCVDRRRGVSKESQTSLHREVRPPYASTDHTAMEITGTDRPGLLSEISAVLSKLECHVTASAVWTHNNRAASIIYMEDGFQ GGPITDPKRLAHVQEQLENVVEAHHGVGERRSVRLTAPAPGQKTHTGRRLHQLMYANMDYEPCQGCNGGGLAHRNNCTKIHVSIDSCKEKGYSVVNVRSR DRPKLLFDTLCALTDMQYVVFHAAVSAKGTMADQEYFIRQQDGCTLDTESERHKLTQCLIAAIERRVSHGARLDICTHNRMGLLSNVTRAFRENGLSISR AEIGTNGDRAVGSFYVTDASGYEANPQAIDEVKKEMGGSVVVVNKSPGWTPKTSKTPSVGSVSRNSSGSIDEEKPRLSPGSLFWSQLKRLSSNFSSIRS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65890		ACR1	ACT domain repeat 1 (.1.2)		Potri.014G006700 [exp]	0	1
AT3G62550			Adenine nucleotide alpha hydro...		Potri.014G122000 [exp]	9.16	0.9195
AT1G45110			Tetrapyrrole (Corrin/Porphyrin...		Potri.002G030701 [exp]	16.88	0.8980
					Potri.003G088201 [exp]	17.97	0.8815
AT3G26740		CCL	CCR-like (.1)		Potri.014G145500 [exp]	18.33	0.8565
AT3G20930			RNA-binding (RRM/RBD/RNP motif...		Potri.008G022280 [exp]	18.97	0.9121
AT1G76430		PHT1;9	phosphate transporter 1;9 (.1)		Potri.002G005500 [exp]	24.16	0.9002	PtrPHT1-9
AT2G28350	ARF	ARF10	auxin response factor 10 (.1)		Potri.004G211700 [exp]	27.65	0.8546	ARF10.2
AT2G35130			Tetratricopeptide repeat (TPR)...		Potri.012G123600 [exp]	28.03	0.8939
AT1G04920		ATSPS3F	sucrose phosphate synthase 3F ...		Potri.017G057800 [exp]	31.60	0.8893
					Potri.001G033500 [exp]	31.63	0.8876

Compare expression of checked genes

Potri.014G006700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.