Plant FIBer expression Database

Potri.014G006800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G10150 350 / 5e-118 ATPP2-A10 Carbohydrate-binding protein (.1)
AT1G59510 310 / 1e-102 CF9 Carbohydrate-binding protein (.1)
AT3G49790 307 / 1e-101 Carbohydrate-binding protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G006600
[exp]
648 / 0 AT1G10150 355 / 8e-120 Carbohydrate-binding protein (.1)
Potri.002G116400
[exp]
405 / 1e-139 AT1G10150 387 / 1e-132 Carbohydrate-binding protein (.1)
Potri.014G014100
[exp]
375 / 8e-128 AT1G10150 401 / 3e-138 Carbohydrate-binding protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003785
[exp]
370 / 8e-126 AT1G10150 447 / 1e-156 Carbohydrate-binding protein (.1)
Lus10007727
[exp]
363 / 1e-123 AT1G10150 429 / 1e-149 Carbohydrate-binding protein (.1)
Lus10012487
[exp]
361 / 3e-122 AT1G10150 439 / 2e-153 Carbohydrate-binding protein (.1)
Lus10011718
[exp]
302 / 1e-99 AT1G10150 288 / 2e-94 Carbohydrate-binding protein (.1)
Lus10039651
[exp]
296 / 3e-97 AT1G10150 298 / 2e-98 Carbohydrate-binding protein (.1)
Lus10018663
[exp]
276 / 1e-90 AT1G10150 342 / 2e-116 Carbohydrate-binding protein (.1)
PFAM info
Representative CDS sequence
>Potri.014G006800.1 pacid=42762909 polypeptide=Potri.014G006800.1.p locus=Potri.014G006800 ID=Potri.014G006800.1.v4.1 annot-version=v4.1
ATGGACCTGCAGTTGCTGAAAAAGGGTCTTCTTGATTATACCAGGAAAAACAAGAGGCGGGCTCTTTTGTTAGCAGCTCTTGGTTTCTCTACATATACTG
CCTATAAAGTTTATCACTTTCCTTCATTAGCTAAAAAACGAAAGAGAATTTCAAAACTTTTTGTAGCTTTAGTTGCTATTGCACAACTTATCTCTGATTC
TGCTGAAACTATTGGGGTTGTCTCTAAGGATTTTAAAGATTTTGTTCAGTCGGAATCGGACCAAATTCCCAATAGTTTAAAGCAAATTTCTAAGGTGGCA
AGGTCTAATGAGTTTTCAGAAGGATTAGTTACCCTTACACAAGCTTTTACTGTGGGAATTTACCAATCCCATGCAAGAATTCATCATGATGCTGGTGCCA
ATGGGGATAGGAATAGCAAAGGAAGTCCAAGTTTATTGGACAAGGTTTTTGAGAAGCCTGCTTCTCCAACTGGGTCTGGTTTTGTTTCTGTTATCGTTGG
AAGCTTTGCTAGGAACTTGGTTCTGGGATTGTATGAAGGTGGTCTGAATTCAATTTCAGATTTGAATGCTGCTGCTGATAGCCATGATTCTTTTCAAAAA
GTGATGGAAGCGGTTTGTGGTGATAAGGGTAGAGAGCTGATTGGTGTTTGTATTCAGTTATTTGTGAGCACAGCAGTTACGGTTTACCTTGACAGGACTA
CGCATATCAACACCTATGATGAATTTTTTGCTGGATTAACCAATCCTAAGCACGAAACCAAAATGAGAGAGGTGTTGGTATCAATCTGTAATGGTGCAAT
TGAGACTCTTGTCAAGACATCTCATCAAGTCTTGACAACTGATGATTCTAACTTGAATTCGAGTTCCGATTCACCTTATTTGGCCATTGATCAAGAAGAA
AGTGCAATAGAGGATGAGGTATCTGGGAAAGAAGCATTTTTTAGTGAATCTATGACAAGAAAGTCAGTTGCTGAGGTGAAGGAGAACGGTTGGGTTAATA
AAGTGTCATCTGCATTGGCAGTCCCAAGCAACAGGAGGCTTGTTCTCGAAGTAACTGGGAGGGTTACGTTTGAGACTGTTCGGTCTCTCCTGGAGTTTCT
GCTGGGGAAGCTATATAATGGAATGCGGAGATGCGTTGATTTTGCTCATGAAGTTGTTGTTGACACTGGTATTGAAGTTGTGAGATATGTCAAAGCAAAA
TCCTCTGTTATTGCAACCCTATGCATTTCTTTTTGCTTGCACATACTGGATGTTGCTTGGATTCTGGTTCCAGCTTAA
AA sequence
>Potri.014G006800.1 pacid=42762909 polypeptide=Potri.014G006800.1.p locus=Potri.014G006800 ID=Potri.014G006800.1.v4.1 annot-version=v4.1
MDLQLLKKGLLDYTRKNKRRALLLAALGFSTYTAYKVYHFPSLAKKRKRISKLFVALVAIAQLISDSAETIGVVSKDFKDFVQSESDQIPNSLKQISKVA
RSNEFSEGLVTLTQAFTVGIYQSHARIHHDAGANGDRNSKGSPSLLDKVFEKPASPTGSGFVSVIVGSFARNLVLGLYEGGLNSISDLNAAADSHDSFQK
VMEAVCGDKGRELIGVCIQLFVSTAVTVYLDRTTHINTYDEFFAGLTNPKHETKMREVLVSICNGAIETLVKTSHQVLTTDDSNLNSSSDSPYLAIDQEE
SAIEDEVSGKEAFFSESMTRKSVAEVKENGWVNKVSSALAVPSNRRLVLEVTGRVTFETVRSLLEFLLGKLYNGMRRCVDFAHEVVVDTGIEVVRYVKAK
SSVIATLCISFCLHILDVAWILVPA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G10150 ATPP2-A10 Carbohydrate-binding protein (... Potri.014G006800
[exp]
0 1
AT4G31940 CYP82C4 "cytochrome P450, family 82, s... Potri.014G038000
[exp]
2.82 0.8711
AT5G18980 ARM repeat superfamily protein... Potri.010G029300
[exp]
3.16 0.8958
AT1G08170 Histone superfamily protein (.... Potri.001G212200
[exp]
5.74 0.8267
AT5G18860 NSH3 nucleoside hydrolase 3, inosin... Potri.008G197400
[exp]
6.92 0.8235
AT3G47570 Leucine-rich repeat protein ki... Potri.005G031300
[exp]
7.00 0.8527
AT1G08990 PGSIP5 plant glycogenin-like starch i... Potri.005G033500
[exp]
7.74 0.8701
AT1G68470 Exostosin family protein (.1) Potri.001G382200
[exp]
8.00 0.8686
AT2G44260 Plant protein of unknown funct... Potri.001G232500
[exp]
8.06 0.8652
AT2G37730 Protein of unknown function (D... Potri.016G101200
[exp]
9.48 0.8323
AT1G23210 ATGH9B6 glycosyl hydrolase 9B6 (.1) Potri.015G127900
[exp]
11.31 0.8398

Potri.014G006800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.