Plant FIBer expression Database

Potri.014G006850 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G65880 48 / 2e-09 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G006700
[exp]
82 / 5e-23 AT5G65880 / unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039652
[exp]
72 / 3e-19 AT5G65880 52 / 3e-11 unknown protein
Lus10011719
[exp]
47 / 4e-08 AT5G65880 39 / 6e-05 unknown protein
PFAM info
Representative CDS sequence
>Potri.014G006850.1 pacid=42762975 polypeptide=Potri.014G006850.1.p locus=Potri.014G006850 ID=Potri.014G006850.1.v4.1 annot-version=v4.1
ATGTTCTTTAGAAGCAGGTTTCTCTCATTTCCTCTGGTGATTGGAGCTGTTGTCATTGGAGTTGTTTCATGGAAGGCAATATTTGGACCCCAACTTGATG
ATTACTGGAAAAAGAAGCTTGTGGAAGAGGCATCTACAAAAGGGGACTGA
AA sequence
>Potri.014G006850.1 pacid=42762975 polypeptide=Potri.014G006850.1.p locus=Potri.014G006850 ID=Potri.014G006850.1.v4.1 annot-version=v4.1
MFFRSRFLSFPLVIGAVVIGVVSWKAIFGPQLDDYWKKKLVEEASTKGD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G65880 unknown protein Potri.014G006850
[exp]
0 1
AT4G13010 Oxidoreductase, zinc-binding d... Potri.001G452600
[exp]
4.00 0.8890
AT2G20370 AtMUR3, MUR3, K... MURUS 3, KATAMARI 1, Exostosin... Potri.002G256200
[exp]
7.07 0.8383
AT3G18670 Ankyrin repeat family protein ... Potri.014G057950
[exp]
7.48 0.8732
AT3G60650 unknown protein Potri.014G060400
[exp]
14.96 0.8717
AT3G05220 Heavy metal transport/detoxifi... Potri.007G021200
[exp]
17.05 0.8738
AT3G26300 CYP71B34 "cytochrome P450, family 71, s... Potri.011G130850
[exp]
22.24 0.8545
Potri.002G101101
[exp]
22.47 0.8727
AT5G26620 unknown protein Potri.005G002500
[exp]
24.49 0.8661
AT5G26620 unknown protein Potri.005G002600
[exp]
25.80 0.8676
AT5G54370 Late embryogenesis abundant (L... Potri.012G145400
[exp]
26.85 0.8720

Potri.014G006850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.