Plant FIBer expression Database

Potri.014G007300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G000900
[exp]
55 / 1e-10 AT5G23420 156 / 8e-48 high-mobility group box 6 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041009
[exp]
41 / 2e-05 AT5G23420 178 / 1e-55 high-mobility group box 6 (.1.2)
Lus10013453
[exp]
40 / 3e-05 AT5G23420 160 / 5e-48 high-mobility group box 6 (.1.2)
PFAM info
Representative CDS sequence
>Potri.014G007300.2 pacid=42763994 polypeptide=Potri.014G007300.2.p locus=Potri.014G007300 ID=Potri.014G007300.2.v4.1 annot-version=v4.1
ATGGAACTTGGCTACCAGCCATTTCCATCACTAAGGCACCTCTGGATGTTATCCAGATTGGTTCCCAGTCAATCAGACACGCACATTTCTCCTTTTATTT
TCATTCTTAAAATCTCTAAGCAGTTAGGAGGAGAAGGAGCCGAGTCTACTGATGGGTTTACTACTACCACTGCTGCTTCACTTGTTCGTGCAAAAGATGA
CAGTGGTTTTGTTAAATGTGAAGAGTGCAAAAAGGATATGCCAGTGGCTTTATAA
AA sequence
>Potri.014G007300.2 pacid=42763994 polypeptide=Potri.014G007300.2.p locus=Potri.014G007300 ID=Potri.014G007300.2.v4.1 annot-version=v4.1
MELGYQPFPSLRHLWMLSRLVPSQSDTHISPFIFILKISKQLGGEGAESTDGFTTTTAASLVRAKDDSGFVKCEECKKDMPVAL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.014G007300
[exp]
0 1
AT3G13540 MYB ATMYB5, ATM2 myb domain protein 5 (.1) Potri.003G079100
[exp]
6.48 0.9278
AT5G05800 unknown protein Potri.011G125150
[exp]
17.66 0.8997
AT3G16370 GDSL-like Lipase/Acylhydrolase... Potri.006G144400
[exp]
23.15 0.9263
AT3G16370 GDSL-like Lipase/Acylhydrolase... Potri.001G191600
[exp]
29.06 0.9257
AT5G02930 F-box/RNI-like superfamily pro... Potri.005G252701
[exp]
30.04 0.8862
AT1G68530 KCS6, CER6, POP... POLLEN-PISTIL INCOMPATIBILITY ... Potri.015G133700
[exp]
35.49 0.8431
AT1G78950 ATLUP3 Terpenoid cyclases family prot... Potri.019G079150
[exp]
41.56 0.8626
AT4G11650 ATOSM34 osmotin 34 (.1) Potri.018G096070
[exp]
45.16 0.9032
AT1G15520 ATABCG40, ABCG4... Arabidopsis thaliana ATP-bindi... Potri.003G057301
[exp]
48.06 0.9063
AT1G32780 GroES-like zinc-binding dehydr... Potri.011G152800
[exp]
53.85 0.8996

Potri.014G007300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.