Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49800 331 / 3e-109 BSD domain-containing protein (.1) AT5G65910 310 / 5e-101 BSD domain-containing protein (.1) AT1G10720 187 / 1e-53 BSD domain-containing protein (.1) AT2G10950 136 / 1e-35 BSD domain-containing protein (.1) AT3G24820 59 / 7e-10 BSD domain-containing protein (.1) AT1G26300 56 / 2e-08 BSD domain-containing protein (.1.2) AT1G69030 53 / 2e-07 BSD domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G006400 [exp] 581 / 0 AT3G49800 288 / 1e-93 BSD domain-containing protein (.1) Potri.014G014200 [exp] 261 / 1e-81 AT1G10720 223 / 6e-68 BSD domain-containing protein (.1) Potri.018G125400 [exp] 166 / 1e-46 AT2G10950 143 / 2e-39 BSD domain-containing protein (.1) Potri.T125207 [exp] 166 / 1e-46 AT2G10950 143 / 2e-39 BSD domain-containing protein (.1) Potri.006G065200 [exp] 160 / 3e-44 AT2G10950 193 / 1e-58 BSD domain-containing protein (.1) Potri.010G137900 [exp] 66 / 1e-11 AT1G26300 241 / 2e-78 BSD domain-containing protein (.1.2) Potri.008G111900 [exp] 56 / 2e-08 AT1G69030 281 / 6e-94 BSD domain-containing protein (.1) Potri.002G242200 [exp] 54 / 3e-08 AT3G24820 167 / 4e-53 BSD domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011556 [exp] 367 / 9e-123 AT3G49800 372 / 3e-126 BSD domain-containing protein (.1) Lus10019271 [exp] 349 / 7e-116 AT3G49800 370 / 3e-125 BSD domain-containing protein (.1) Lus10039982 [exp] 130 / 3e-33 AT2G10950 156 / 2e-44 BSD domain-containing protein (.1) Lus10027706 [exp] 127 / 9e-33 AT2G10950 147 / 9e-42 BSD domain-containing protein (.1) Lus10036831 [exp] 59 / 4e-09 AT1G26300 305 / 2e-103 BSD domain-containing protein (.1.2) Lus10019194 [exp] 57 / 1e-08 AT1G26300 294 / 8e-99 BSD domain-containing protein (.1.2) Lus10038170 [exp] 50 / 5e-07 AT3G24820 162 / 3e-51 BSD domain-containing protein (.1) Lus10025929 [exp] 49 / 2e-06 AT3G24820 161 / 2e-50 BSD domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03909 [poplar] [flax] BSD BSD domain
Representative CDS sequence Show only first row Show all	>Potri.014G008400.1 pacid=42764775 polypeptide=Potri.014G008400.1.p locus=Potri.014G008400 ID=Potri.014G008400.1.v4.1 annot-version=v4.1 ATGTCATGGCTAGCAAGATCTATAGCTAATTCTCTCAAATTCGAAGACGACGATCAACAACCAGATAAGAACACCACCGCCACCACAACCTCCGCCCCAA CTACCGATAATGTTAATAATAATAAAGATTTATCGAATTCGGAATCGGATCAACAACAATCCGCGACACCTCGTGGTGTCAAAGAAGACCTTACAGATCT CAAAAAAACCCTAACCCGCCAATTATGGGGTGTGGCATCTTTCCTCGCTCCTCCACCTGAACCACCGTTGACGGAGAATCGTTCTCATACTTCGGATCCG GATGGATCCAACGATGATGACGATGACGCTGCATTGATTGCCGGCATTAGGAGCGATTTTGCGGAAATTGGGGGCAGATTTAAGTCAGGGATCACCAAGC TGTCCAGTAACAAAACGGTGTCGGAGTTTACTAAGATTGCCTCCAATTTGCTGCAGCTTGGATCCGAGAGTCATGAGATTGGGACTACTGCTTCTGCTGT GGGCGTGACTGAAGAAGTTGTGGGTTTTGCTAGAGATGTCGCCATGCATCCTGAGACTTGGCTCGACTTCCCTCTTCCTGATGTTCAAGGGTTTGAAGAT TTTGACATGTCAGATGCCCAACAAGAACATGCTTTAGCTGTTGAGCATCTTGCTCCCAGATTAGCTGCTCTGAGGATTGAACTTTGTCCAGGATATATGA GTGAGGGCTGCTTTTGGAAGATTTACTTTGTGCTGTTGCACCCTAGACTCAGTAAACATGATGCTGAACTATTGTCAACTCCCCAAATAGTGGAGGCAAG GGCGATGTTGTCGCATGAGTTACAGAACAAAGCCAAGGCAAAATCCACTCCAGATTGGTCTGGAGTTGACACTTCTAATGTAAAAGCTGATTTGCCTCAT GAAGAGTCTCTGTCTGTGCCATCTCGTGCCAAGTCTGAATCGGTTCCAATCATGACATCTGGCATTGAAGCAGTCTCTCCCACACTTGCAGCCAAGACAT CTGATAATGAAGCAGCCCCTTCCTTTGTTTCTGTTGAATCAGAAACAGAAAAGCATCCAGTTGAAAGTACTCAGATGCAAATTATTGACAAATCCGTGGT CGAGGAAGGAAAAGTTGACCAGACCAAGCATCAACATTCATCATCCAGTTCCTCCTCTGGGATTCTGGAAGAGAAATTTGACGATGATGGTGATGATTGG TTGAAAGATGATAGTTCAGAAATGATTGGTGTCAGTGGATCCTCGATGCCTCTTGGAAATGATGAGGATGTCTCATTCAGTGATCTTGAAGAGGATGATG GAGATGAACCTGCAAGTTACAAGAAAGTGGCATCAGGCTCTGATTGTGCAACAAAAGGATCACAAGATTGGGTTCAGCTGAGCAGAAGCTCTGCTGACTC AGTCAAGGATATCAAGCCTGTTAGCATAAAAAATGCTGGGTCTGAGAAGGTAAGCGCTCGCAACTCTGAAAACAAGGAATCTAGTGATTGGCTTGATGTT GATGACATTGATGTGATATGA
AA sequence Show only first row Show all	>Potri.014G008400.1 pacid=42764775 polypeptide=Potri.014G008400.1.p locus=Potri.014G008400 ID=Potri.014G008400.1.v4.1 annot-version=v4.1 MSWLARSIANSLKFEDDDQQPDKNTTATTTSAPTTDNVNNNKDLSNSESDQQQSATPRGVKEDLTDLKKTLTRQLWGVASFLAPPPEPPLTENRSHTSDP DGSNDDDDDAALIAGIRSDFAEIGGRFKSGITKLSSNKTVSEFTKIASNLLQLGSESHEIGTTASAVGVTEEVVGFARDVAMHPETWLDFPLPDVQGFED FDMSDAQQEHALAVEHLAPRLAALRIELCPGYMSEGCFWKIYFVLLHPRLSKHDAELLSTPQIVEARAMLSHELQNKAKAKSTPDWSGVDTSNVKADLPH EESLSVPSRAKSESVPIMTSGIEAVSPTLAAKTSDNEAAPSFVSVESETEKHPVESTQMQIIDKSVVEEGKVDQTKHQHSSSSSSSGILEEKFDDDGDDW LKDDSSEMIGVSGSSMPLGNDEDVSFSDLEEDDGDEPASYKKVASGSDCATKGSQDWVQLSRSSADSVKDIKPVSIKNAGSEKVSARNSENKESSDWLDV DDIDVI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49800			BSD domain-containing protein ...		Potri.014G008400 [exp]	0	1
AT5G46860		SGR3, ATVAM3, A...	SHOOT GRAVITROPISM 3, ARABIDOP...		Potri.001G138500 [exp]	2.00	0.8962	Pt-SYP23.2
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Potri.006G235132 [exp]	6.00	0.8516
AT2G46550			unknown protein		Potri.014G100300 [exp]	8.36	0.8227
AT5G46330		FLS2	FLAGELLIN-SENSITIVE 2, Leucine...		Potri.011G068500 [exp]	11.22	0.8580
AT1G08110			lactoylglutathione lyase famil...		Potri.004G214966 [exp]	11.48	0.8224
AT2G18250		ATCOAD	4-phosphopantetheine adenylylt...		Potri.005G121200 [exp]	15.42	0.8167
AT3G08650			ZIP metal ion transporter fami...		Potri.006G111200 [exp]	15.49	0.8146
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.001G270800 [exp]	20.78	0.8142
AT5G55850		NOI	RPM1-interacting protein 4 (RI...		Potri.001G368900 [exp]	25.39	0.7207
AT2G42320			nucleolar protein gar2-related...		Potri.016G051500 [exp]	26.40	0.8145

Compare expression of checked genes

Potri.014G008400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.