Plant FIBer expression Database

Potri.014G010100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G65620 1199 / 0 Zincin-like metalloproteases family protein (.1)
AT5G10540 1159 / 0 Zincin-like metalloproteases family protein (.1)
AT1G67690 161 / 4e-41 Zincin-like metalloproteases family protein (.1)
AT5G51540 151 / 7e-38 Zincin-like metalloproteases family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G004600
[exp]
1308 / 0 AT5G65620 1196 / 0.0 Zincin-like metalloproteases family protein (.1)
Potri.009G151300
[exp]
178 / 9e-51 AT5G65620 187 / 1e-54 Zincin-like metalloproteases family protein (.1)
Potri.010G054466
[exp]
168 / 2e-43 AT1G67690 850 / 0.0 Zincin-like metalloproteases family protein (.1)
Potri.015G129300
[exp]
136 / 5e-33 AT5G51540 1015 / 0.0 Zincin-like metalloproteases family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004276
[exp]
1142 / 0 AT5G10540 1183 / 0.0 Zincin-like metalloproteases family protein (.1)
Lus10019236
[exp]
1060 / 0 AT5G65620 1073 / 0.0 Zincin-like metalloproteases family protein (.1)
Lus10037058
[exp]
175 / 1e-45 AT1G67690 858 / 0.0 Zincin-like metalloproteases family protein (.1)
Lus10036925
[exp]
162 / 2e-41 AT1G67690 826 / 0.0 Zincin-like metalloproteases family protein (.1)
Lus10031715
[exp]
152 / 4e-38 AT5G51540 1017 / 0.0 Zincin-like metalloproteases family protein (.1)
Lus10031136
[exp]
98 / 1e-20 AT5G51540 917 / 0.0 Zincin-like metalloproteases family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0126 Peptidase_MA PF01432 Peptidase_M3 Peptidase family M3
Representative CDS sequence
>Potri.014G010100.1 pacid=42764065 polypeptide=Potri.014G010100.1.p locus=Potri.014G010100 ID=Potri.014G010100.1.v4.1 annot-version=v4.1
ATGCCCACACGCCACAAGAGGGAAAATGAAAATAAAAACAACAAAACTATTTGTACTCTCCACACAATACAACACATGGCAGAGACTAGAAAAGTACATC
CAGTAGGAGCTGTTCTCCTTATAATCAACCTTCTCATGGCTTCACGTATCTCTCTCTCCCGCTCCATCCTGCTCCTCCAACGCACAAACAACCACTTCCC
TTATTCCCATTTTACCCCCAAACGTTTTCCCAAATCTTATCCTTGCCCTCTCTGGTCTTCGTCCTTCTCCTTGTGTCTCCAAACACTTCACAAATCATCA
ACCACAACAGCAACAACCCCTCCCTCTATCTCTAACTGCTACTCTTCAATTTCAATGGACCCTGTTGTTGATGAGGCCAATCCTTTACTGCAAGACTTTG
AATTCCCTCCTTTTGATGTTGTTGAGGCCAAACATGTTCGACCTGGGATTCGTGCTCTCCTAAAGAACCTCGAGAGTGATTTGGAGGAATTGGAGAGAAC
AGTGGAGCCATCATGGCCAAAATTGGTAGAGCCATTGGAGAAGATTGCAGATCAGTTGACTGTTGTTTGGGGTATGATAAATCATCTCAAGGCTGTTAAA
GACTCACCTGAACTCCGCGCTGCTATCGAAGAAGTTCAGCCCGAAAAGGTGAAATTTCAGCTTAGGCTGGGACAAAGTAAACTTATATATAATGCATTTA
AGGCCATCCAAGATTCTCCTCAATGGCCATCACTAAGTGATGCTCGGAAACGTATAGTGGAATCCCAAATAAAAGAAGGGGTTCTTAATGGTGTTGCTCT
TGATGATGATAAAAGAGAGCAGTTCAACAAAATTGAACAGGAACTGGAAAGACTATCCCAAAAATTTGGGGAGAACGTACTGGACGCCACAAAGAAGTTT
GAAAAAATCATAACAGATAAGAAAGATATTGAAGGATTGCCTGCTACCTCACTTGGTTTGGCTGCGCAGACTGCAGTATCTAAGGGGCATACAGATGCAT
CTGCTGAGAATGGACCGTGGATAATTACATTGGATGCCCCAAGTTTTATGTCTGTCATGCAACATGCAAGAAATCGTGGTTTACGTGAAGAAATCTACCG
TGCATATGTAACTCGAGCTTCAAGTGGTGATCTGAATAATACAGCAATTATTGATGAAATATTGAAGCTTAGGCTTGAAAAGGCTAAGCTCCTTGGCTAC
AACAACTACACTGAGGTAAGCATGGCAACCAAGATGGCTACTGTCGAGAAAGCAGAAGAGCTACTAGAAAAGCTGCGCGCAGCTTCTTGGAATGCTGCTG
TTCAAGATATGGAAGACCTTAAAATTTTCTCCAAAAATCAAGGTGCAATGGAAGCAAATGATTTAACTCACTGGGATACCGGCTTCTGGGCTGAGAGGCT
GCGCGAGTCAAAATATGATATCAATGAGGAAGAACTACGTCCATTTTTTTCATTGCCAAAGGTTATGGATGGCCTTTTCAACCTTGCAAAGACAATTTTT
GGAATTGATATTGAACCAGCTGATGGTCTTGCTCCGGTTTGGAATAATGATGTTAAATTCTACTGCGTCAAAGATTCCTTGGGCAGTCCAATTGCATACT
TCTATTTTGATCCATATTCTCGTCCATCTGAGAAACGGGGTGGTGCATGGATGGGTGAGGTAGTTTCTCGAAGTCGTGTTTTGTCACCCAATGGTACTGC
TCCAAGGTTGCCTATTGCCCACATGGTGTGCAACCAAACACCGCCAGTTGGGGACAAACCAAGCCTGATGACATTTCGGGAGGTTGAGACTGTATTCCAT
GAATTTGGTCACGCCCTCCAGCATATGCTAACCAAGCAGGATGAGGGTCTTGTTGCTGGCATCCGGGGTATAGAGTGGGATGCTGTTGAATTGCCCTCCC
AGTTCATGGAAAATTGGTGTTATCACAGGGAAACTTTGATGGGCATTGCAAAGCACTATGAAACTGGGGAAAGTCTCCCCGAAGAAGTGTACTTGAAGCT
TCTTGCTGCAAGGACTTTTCGAGCAGGGTCCTTTAGTCTTCGTCAGATAAAATTTGCAAGTTTAGATTTGGAGTTGCATACAAAATATATACCAGGTGCA
TTGGAGTCTATCTATGATGTTGACCAAAGGGTCTCTGAAAGGACACAAGTGATCCCTCCTTTGCCAGAAGATAGATTCCTCTGCGGTTTCAGTCATATTT
TTGCAGGCGGTTATGCAGCTGGATACTACAGTTACAAGTGGGCTGAGGTATTATCTGCTGATGCTTTCTCAGCCTTTGAGGATGCTGGATTGGATAACCA
CAAGGCTGTTAAAGAAACAGGGCACAAGTTCCGGGAAACCATTCTTGCTCTTGGAGGTGGAAAAGCGCCACTAGAGGTTTTTGTTGAGTTCCGAGGGCGG
GAACCTTCGCCAGAGGCACTGCTCAGGCACAATGGCTTGTTATCAGTGACAACCTCTGCATAA
AA sequence
>Potri.014G010100.1 pacid=42764065 polypeptide=Potri.014G010100.1.p locus=Potri.014G010100 ID=Potri.014G010100.1.v4.1 annot-version=v4.1
MPTRHKRENENKNNKTICTLHTIQHMAETRKVHPVGAVLLIINLLMASRISLSRSILLLQRTNNHFPYSHFTPKRFPKSYPCPLWSSSFSLCLQTLHKSS
TTTATTPPSISNCYSSISMDPVVDEANPLLQDFEFPPFDVVEAKHVRPGIRALLKNLESDLEELERTVEPSWPKLVEPLEKIADQLTVVWGMINHLKAVK
DSPELRAAIEEVQPEKVKFQLRLGQSKLIYNAFKAIQDSPQWPSLSDARKRIVESQIKEGVLNGVALDDDKREQFNKIEQELERLSQKFGENVLDATKKF
EKIITDKKDIEGLPATSLGLAAQTAVSKGHTDASAENGPWIITLDAPSFMSVMQHARNRGLREEIYRAYVTRASSGDLNNTAIIDEILKLRLEKAKLLGY
NNYTEVSMATKMATVEKAEELLEKLRAASWNAAVQDMEDLKIFSKNQGAMEANDLTHWDTGFWAERLRESKYDINEEELRPFFSLPKVMDGLFNLAKTIF
GIDIEPADGLAPVWNNDVKFYCVKDSLGSPIAYFYFDPYSRPSEKRGGAWMGEVVSRSRVLSPNGTAPRLPIAHMVCNQTPPVGDKPSLMTFREVETVFH
EFGHALQHMLTKQDEGLVAGIRGIEWDAVELPSQFMENWCYHRETLMGIAKHYETGESLPEEVYLKLLAARTFRAGSFSLRQIKFASLDLELHTKYIPGA
LESIYDVDQRVSERTQVIPPLPEDRFLCGFSHIFAGGYAAGYYSYKWAEVLSADAFSAFEDAGLDNHKAVKETGHKFRETILALGGGKAPLEVFVEFRGR
EPSPEALLRHNGLLSVTTSA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G65620 Zincin-like metalloproteases f... Potri.014G010100
[exp]
0 1
AT1G05675 UDP-Glycosyltransferase superf... Potri.017G032300
[exp]
6.92 0.9350
AT1G07705 NOT2 / NOT3 / NOT5 family (.1.... Potri.001G349400
[exp]
7.21 0.8990
AT1G05680 UGT74E2 Uridine diphosphate glycosyltr... Potri.017G032700
[exp]
9.00 0.9345
AT2G43820 SGT1, ATSAGT1, ... UDP-glucose:salicylic acid glu... Potri.017G032766
[exp]
10.00 0.9333
AT1G70610 ABCB26, ATTAP1 ATP-binding cassette B26, tran... Potri.010G045900
[exp]
12.96 0.9194 ATTAP1.1
AT2G15490 UGT73B4 UDP-glycosyltransferase 73B4 (... Potri.009G099032
[exp]
13.78 0.9319
AT2G46870 B3 NGA1 NGATHA1, AP2/B3-like transcrip... Potri.014G107200
[exp]
16.43 0.9203
AT1G05680 UGT74E2 Uridine diphosphate glycosyltr... Potri.017G032500
[exp]
16.79 0.9253 ZOG1.12
AT5G26940 DPD1 defective in pollen organelle ... Potri.005G020600
[exp]
19.97 0.9083
AT1G05680 UGT74E2 Uridine diphosphate glycosyltr... Potri.017G032733
[exp]
20.78 0.9214

Potri.014G010100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.