Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65840 322 / 6e-111 Thioredoxin superfamily protein (.1) AT2G37240 103 / 2e-26 Thioredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G007201 [exp] 114 / 2e-32 AT5G65840 101 / 7e-28 Thioredoxin superfamily protein (.1) Potri.006G133100 [exp] 100 / 7e-25 AT2G37240 325 / 6e-113 Thioredoxin superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011727 [exp] 337 / 2e-117 AT5G65840 297 / 1e-101 Thioredoxin superfamily protein (.1) Lus10014017 [exp] 92 / 1e-21 AT2G37240 316 / 1e-109 Thioredoxin superfamily protein (.1) Lus10019900 [exp] 61 / 6e-11 AT2G37240 214 / 7e-70 Thioredoxin superfamily protein (.1) Lus10029111 [exp] 43 / 0.0002 AT2G37240 61 / 2e-10 Thioredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF13911 [poplar] [flax] AhpC-TSA_2 AhpC/TSA antioxidant enzyme
Representative CDS sequence Show only first row Show all	>Potri.014G012100.2 pacid=42764327 polypeptide=Potri.014G012100.2.p locus=Potri.014G012100 ID=Potri.014G012100.2.v4.1 annot-version=v4.1 ATGAGAGGACCAGAATCAATTTGTGGGCCGATTCAACAAATCTCTTGTAAACCACTTAGCAGCAGCATCATGGCGATGATATCTACAAAATCACTACTGC AAGTACCATCACCTACCTGTCTTTCCTCTGCAAAATATGGCCAATTTCTCTCAGTAACAACCACCCCTACTTTCTCTCCCAAAAGAACACCCCTTACTCT TATCACTACCCGCAGTGCTAAGAAACCCTCACGTCTCATCATGGGGGCCTCTGCATCCAGTTTCTCAGCAGACATAGGTGGAGTCCTAAGTGATGTTAGC ATTTTTACCACTGCTGGTCAACCTGTCATGTTTAAGGATCTCTGGGACCAAAACGAGGGAATTGCTGTTGTTGCCCTTTTGAGACACTTTGGATGTCCTT GCTGTTGGGAACTTGCTTCCTCATTAAAGGAATCGAAAGAAAAATTCGATTCATCCGGGGTCAAGCTAATTGCAATTGGTGTCGGTACTCCTAATAAAGC TCGTTTGCTGGCTGAAAGGTTACCATTTCCAATGGATTGCCTTTATGCTGATCCTGAGCGCAAGGCTTATGATGTCTTGGGCTTATACTATGGTCTTGGA CGTACATTCTTCAATCCGGCTAGTGCTAAGGTTTTTTCAAGATTTGATGCTCTGCGAAAAGCTGTGAAAAACTACACCATCGAAGCCACCCCAGATGATA GAAGTGGTGTACTGCAACAGGGAGGAATGTTTGTTTTCAAAGGGAAGCAGTTACTGTATGCCAGGAAAGATGAAGGGACAGGAGATCATGCCCCGTTAGA TGATATCTTTGAGATTTGCTGCAAAGTTCCTGTTGCATGA
AA sequence Show only first row Show all	>Potri.014G012100.2 pacid=42764327 polypeptide=Potri.014G012100.2.p locus=Potri.014G012100 ID=Potri.014G012100.2.v4.1 annot-version=v4.1 MRGPESICGPIQQISCKPLSSSIMAMISTKSLLQVPSPTCLSSAKYGQFLSVTTTPTFSPKRTPLTLITTRSAKKPSRLIMGASASSFSADIGGVLSDVS IFTTAGQPVMFKDLWDQNEGIAVVALLRHFGCPCCWELASSLKESKEKFDSSGVKLIAIGVGTPNKARLLAERLPFPMDCLYADPERKAYDVLGLYYGLG RTFFNPASAKVFSRFDALRKAVKNYTIEATPDDRSGVLQQGGMFVFKGKQLLYARKDEGTGDHAPLDDIFEICCKVPVA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65840			Thioredoxin superfamily protei...		Potri.014G012100 [exp]	0	1
AT1G76760		ATY1, TRX-Y1	thioredoxin Y1 (.1)		Potri.005G193400 [exp]	1.00	0.9874	PtrTrxy1
AT2G01590		CRR3	chlororespiratory reduction 3 ...		Potri.010G110100 [exp]	1.73	0.9871
AT3G08740			elongation factor P (EF-P) fam...		Potri.016G136600 [exp]	2.00	0.9873
AT3G46660		UGT76E12	UDP-glucosyl transferase 76E12...		Potri.001G245900 [exp]	2.82	0.9785
AT3G52380		CP33, PDE322	PIGMENT DEFECTIVE 322, chlorop...		Potri.006G202000 [exp]	2.82	0.9850
AT3G52380		CP33, PDE322	PIGMENT DEFECTIVE 322, chlorop...		Potri.016G068300 [exp]	3.87	0.9835	CP33.2
AT3G57990			unknown protein		Potri.001G145400 [exp]	5.29	0.9670
AT3G20680			Domain of unknown function (DU...		Potri.011G132500 [exp]	5.47	0.9802
AT2G35490			Plastid-lipid associated prote...		Potri.001G137900 [exp]	7.93	0.9795
					Potri.008G218433 [exp]	8.66	0.9744

Compare expression of checked genes

Potri.014G012100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.