Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49710 996 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G68930 509 / 4e-171 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G25360 498 / 3e-166 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 497 / 6e-166 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G02010 497 / 1e-165 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33170 491 / 5e-161 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 483 / 1e-159 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 478 / 4e-158 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 474 / 1e-155 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 467 / 2e-155 MEF22 mitochondrial editing factor 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G136200 [exp] 583 / 0 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.007G085500 [exp] 537 / 0 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.002G155100 [exp] 530 / 2e-178 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 524 / 2e-174 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G027800 [exp] 501 / 2e-167 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G184800 [exp] 496 / 2e-164 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 492 / 6e-163 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 486 / 2e-161 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 493 / 4e-161 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020081 [exp] 979 / 0 AT3G49710 886 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016425 [exp] 536 / 0 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030908 [exp] 530 / 3e-173 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10035164 [exp] 512 / 3e-171 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030581 [exp] 522 / 3e-170 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10031994 [exp] 509 / 5e-170 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013991 [exp] 494 / 6e-163 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 489 / 1e-160 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 476 / 3e-159 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019735 [exp] 474 / 2e-156 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.014G012500.1 pacid=42764210 polypeptide=Potri.014G012500.1.p locus=Potri.014G012500 ID=Potri.014G012500.1.v4.1 annot-version=v4.1 ATGACCCAATTCTCATGGACCCTGCAAAGCTTTCGCCAAATCTTGAAATCATGCATAGCCAACAAAGACCTCTTAACAGGAAAATCCCTCCATACTATCT ACCTCAAATCTCTAATACCTTCCTCAACCTATCTCTCCAACCACTTCATCCTCCTTTACTCCAAATGCAACCTCCTAACCACTGCTCACCATGCTTTTAA CCAAACCCATGAACCAAATGTTTTTTCTTTTAATGCTCTCATTGCTGCTTATGCTAAAGAATCACTCATTCATGTTGCACACCACTTGTTTGATCAAATA CCCCAACCAGACCTTGTTTCTTTTAACACACTCATTAATGCTTACGCGGATCGTGGGGATACTTTATCTGCGTTAAGTTTGTTTGGGGAAATGAGAGAGA TGGGTCTTGTCATGGATGGATTCACTTTTTCTGGAGTGATCACTGCTTGCTGCAATCATGTTGGTTTGATTAGACAGTTGCATTCTCTGGCCTTTTCGTC CGGTTTCGATTCCTATGTTTCGGTGAAAAATTCTCTGCTTACTTATTATAGTAAAAATGGGATTTTGGAGGAGGCAGAAATGGTGTTTAATGGGATGGGA GAGGAAGTTAGAGATGAGGTTTCTTGGAACTCTATGATTGTGGCATATGGGCAGCATAAAAGGGGGCTTAAAGCTTTAGCATTGTATCGAGATATGGTTC ATAGGGGTTTTGAAATTGATATGTTTACTCTAGCGAGTGTCTTAACGACTTTTTCATGTGTGGAGGATTTGTCCGGGGGGCTTCAGTTCCATGCTAAGGC GATCAAAACTGGGTTTAATAAAAATCGTCACGTAGGAAGCGGTTTGATTGACATGTATGCAAAGTGTGGAGCTGGCATGTCAGAATCAAGGAAAGTATTT GAAGAGATTTGTGGATCAGACTTGGTTGTTTGGAATACAATGATTTCTGGATATTCACAGAATAAGGAGCTATCTGTGGAGGCTCTTGAATGTTTTAGAC AGATGCAGCGTGCAGGTTATTGGCCAGATGATTGTAGCTTTGTGTGTGCAATTAGCGCGTGCTCTAATTTATCATCTCCTTCTCAGGGAAAACAGTTCCA TGCATTGGCAATGAAATCTGAGATCCCTTCAAATCAAATTTCAGTAAATAATGCACTTGTGACAATGTATTCAAAGTGCGGAAACCTTCAAGATGCAAGA AAATTATTTCAGAGGATGCCCCAACATAACACTGTGACATTAAATTCCATTATTGCAGGCTATGCTCAACATGGAATTGGAACTGAATCACTAAACCTTT TCGAACAGATGCTTGCAGCTAGTATTGCCCCTACAAGTATAACCTTGGTTTCTATCCTTTCTGCTTGTGCACACACTGGAAGAGTTGAGGAGGGCAAGAA GTATTTTAATATGATGAAAGATATATTTGGGATCGAACCTGAAGCAGAACATTATTCATGCATGATTGATCTTTTGGGTCGAGCTGGCAAGTTGAGTGAA GCTGAGAGGCTGATTGACACCATGCCCTTTAGCCCTGGATCTGCAGCTTGGGCTGCACTACTTGGTGCTTGTAGGAAATATGGAAATATGGAGCTAGCTG AGAAGGCAGCAAACCAGTTTTTGCAGCTGGAACCTACAAATGCTGTACCCTATATCATGCTTGCAAGTATGTATTCCGCTGCCAGAAAATGGGAAGAGGC AGCAAGAATTAGAAAGCTTATGCGAGATCGAGGCATAAGGAAGAAACCAGGCTGTAGTTGGATTGAATTAAACAAAAGGGTGCATGTGTTTGTGGCTGAA GATAATTCGCATCCAAGGATAAAGGAAATTCACATGTACTTGGATGAGATGTTTGTCAAGATGAAGAGAGCTGGGTATGTGCCAGATGTGAGATGGGCTT TTGTTAAAGACGATGAAACAGGGGAACAAGAGAAAGAGATTATGTTAGCGCATCATAGCGAGAAGCTAGCAGTTGCATTCGGACTTCTTTTTACAAAACA TGGGGAGCCTTTACTTGTGGTGAAAAACCTGAGGATATGTGGGGATTGCCACAATGCAATCAAATTTATGTCGGCTATTGCTCGTCGAAAAATTACTGTA AGGGATGCCTATAGATTTCATTGCTTTGAGGATGGGCGGTGCTCTTGTGGGGATTATTGGTGA
AA sequence Show only first row Show all	>Potri.014G012500.1 pacid=42764210 polypeptide=Potri.014G012500.1.p locus=Potri.014G012500 ID=Potri.014G012500.1.v4.1 annot-version=v4.1 MTQFSWTLQSFRQILKSCIANKDLLTGKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLTTAHHAFNQTHEPNVFSFNALIAAYAKESLIHVAHHLFDQI PQPDLVSFNTLINAYADRGDTLSALSLFGEMREMGLVMDGFTFSGVITACCNHVGLIRQLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAEMVFNGMG EEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSCVEDLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVF EEICGSDLVVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHALAMKSEIPSNQISVNNALVTMYSKCGNLQDAR KLFQRMPQHNTVTLNSIIAGYAQHGIGTESLNLFEQMLAASIAPTSITLVSILSACAHTGRVEEGKKYFNMMKDIFGIEPEAEHYSCMIDLLGRAGKLSE AERLIDTMPFSPGSAAWAALLGACRKYGNMELAEKAANQFLQLEPTNAVPYIMLASMYSAARKWEEAARIRKLMRDRGIRKKPGCSWIELNKRVHVFVAE DNSHPRIKEIHMYLDEMFVKMKRAGYVPDVRWAFVKDDETGEQEKEIMLAHHSEKLAVAFGLLFTKHGEPLLVVKNLRICGDCHNAIKFMSAIARRKITV RDAYRFHCFEDGRCSCGDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49710			Pentatricopeptide repeat (PPR)...		Potri.014G012500 [exp]	0	1
AT5G28040	GeBP		DNA-binding storekeeper protei...		Potri.004G090900 [exp]	3.31	0.7711
					Potri.017G041400 [exp]	8.66	0.7529
AT1G18010			Major facilitator superfamily ...		Potri.012G011000 [exp]	11.57	0.7587
AT2G41490		GPT	UDP-glcnac-adolichol phosphate...		Potri.016G042100 [exp]	12.64	0.7099	Pt-GPT.3
AT1G14060			GCK domain-containing protein ...		Potri.019G081400 [exp]	25.00	0.7270
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Potri.004G181800 [exp]	29.39	0.7156
AT4G30770			Putative membrane lipoprotein ...		Potri.005G066500 [exp]	31.93	0.6933
AT1G66740		AtSP7, SGA2, AS...	ANTI- SILENCING FUNCTION 1A, A...		Potri.017G121100 [exp]	35.49	0.6900	SGA902
AT1G77330			2-oxoglutarate (2OG) and Fe(II...		Potri.005G182700 [exp]	36.27	0.7138	ACO4
AT2G46520			cellular apoptosis susceptibil...		Potri.002G172700 [exp]	38.78	0.6000

Compare expression of checked genes

Potri.014G012500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.