Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58470 180 / 2e-51 XF41, ATRBP1 RNA-binding protein 1 (.1) AT4G14300 168 / 1e-46 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G55550 164 / 6e-45 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT4G26650 161 / 1e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G07810 154 / 1e-40 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G33410 150 / 4e-40 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G47620 150 / 9e-40 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT5G40490 113 / 6e-27 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G13224 110 / 2e-26 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G17640 101 / 3e-23 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G115000 [exp] 399 / 2e-136 AT1G58470 219 / 7e-69 RNA-binding protein 1 (.1) Potri.002G258600 [exp] 178 / 4e-50 AT4G14300 277 / 1e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G195300 [exp] 177 / 9e-50 AT4G14300 305 / 2e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G170400 [exp] 174 / 3e-48 AT4G14300 317 / 2e-104 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G067500 [exp] 173 / 6e-48 AT4G14300 302 / 7e-99 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.011G088100 [exp] 161 / 2e-43 AT3G07810 428 / 1e-146 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G361300 [exp] 159 / 1e-42 AT3G07810 433 / 1e-148 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G015700 [exp] 156 / 1e-41 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G010200 [exp] 156 / 1e-41 AT3G07810 413 / 2e-140 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007721 [exp] 223 / 3e-66 AT1G58470 222 / 6e-68 RNA-binding protein 1 (.1) Lus10018657 [exp] 213 / 1e-63 AT1G58470 233 / 1e-73 RNA-binding protein 1 (.1) Lus10022889 [exp] 171 / 9e-48 AT4G14300 315 / 9e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10043168 [exp] 163 / 6e-44 AT3G07810 456 / 2e-157 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043124 [exp] 161 / 1e-43 AT2G33410 334 / 2e-111 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10024937 [exp] 160 / 1e-43 AT4G14300 306 / 4e-101 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10032579 [exp] 161 / 2e-43 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039053 [exp] 156 / 9e-42 AT3G07810 417 / 1e-142 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10038806 [exp] 157 / 2e-41 AT3G07810 417 / 2e-141 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032624 [exp] 155 / 2e-41 AT2G33410 335 / 2e-112 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.014G012700.2 pacid=42764063 polypeptide=Potri.014G012700.2.p locus=Potri.014G012700 ID=Potri.014G012700.2.v4.1 annot-version=v4.1 ATGGATGTTGAGGAAAGGAAGCTTTTTGTGGGAGGTATACCGCGAGGGACGAGCGAGGACACTCTAAGAGATCACTTCAGTAAATACGGTGTCGTTTCGC ATTTACTCGTGGCCAAGGACCAAATCACTAAATTACCAAGAGGGTTTGCTTTTGTTGTGTTCTCTGAAGCTGCTTCTGCTGCTAGGGCTCTTCAAGATAG CCATGTTATTTGTGGAAGAACGGTAGAAGTGAAGAAAGCAATACCCAAAACTGAAAAACACCAAGAGCACCGGCAGCGCCACCCCCATGGTAACCAGGAA ACTGCTAGCAATGGGTCGGGGATGAATAGTGATAATAGTACTGGCAATGTAAATTATTATAGGACTAAGAAGATATTTGTGGGAGGTTTATCATCTAGTC TAACTGATGAACAATTTAGAAATTACTTTGAAAAGTTTGGTAGGACGGTAGATGCAATTGTGATGCAGGATAGTTCAAACAAGCCTAGGAGCTTTGGGTT TGTCACCTTTGATTCCGAGGAATCTGCTGCCAAGGTTATGCGCAACAGTTTTCATGAGTTGAACGGTAAGACAGTGGAGGTTAAGAAGGCTGTGCCAAAA GATAGAGTAAATGGTGATATTGGTAGCTGTAGTTCAAATGGCTTCGCTGATAAAGGTCCTGAACCTGAAAATCACCCTTTCTATGGTTCGACACACGACC CACATTATACTCCTTTTCTGATGTATGATGGTGTTCGTGGGTATTTTTATGGAATGAGTTTCTATGGGGGTGTGTATCCTATGGTAGGATTCGGAAGACC TGTTTTGGGTGTTTCACCAATGGTCCCTACTATCCCATTCATGCCTGCAGCTGGACCGTTTCCTTACAACAATGCCTGTCTTTATCTTGCTTACATGCAT GATGCGAGTAGCACTTGGGCTATGGAGGTTGTTGGGCATAATCAGATTGTTGAGCCTGGTGTGAATGGTGAAGTGGACGTGGTTCATGACAGCAATGTTC ATGTTCCATCTAATGCCACAACACCTCCGAGCGAAGAGGGCAATGTTGGAAGTGAATCTTTTGGTTTAAAAGGTGGTGATGTGGATGCAGTTCATGACAG CAATGGACATGTTGTGCCTGGTATGAATGGTGAAGAGGTTGGTGGGTGTAATCAGGTTGTTGAGCCTGGTGTGAATGGTGAAGTGGACGTGGTTCGTGAC AGCAATGGACATGTTCCATCTAATGCAACAGCACCTGAGAGTGAAGAGGGCAAGGTTGGAAGTGGTTTAAAAGGTGGTGATATGGATGCGGTTCCTGACA ACAACGGACATGTTGAGCCTGGTGTGAATGGTGAAGTGGACGCAGTTCATGACAGCAATGGACATGTTCCATCTAATGCAACAGCACCTCCAAGTGAAGA GGGCAAGGTTGGAAGTGATGCTTTTGGTTTAAAAGGTGGTGATGTGGATGCGGTTCCTGACATCAATGGGCATTTTGAGCCTGATGTGAATGGTGAAGAG GTTGGCGGGTACAATCAGATTGTTGAGCCTGACGTAAATGGTGAAGTGGAAGCCTTTGGTGACAGCAATGGACATGTTCCATCTAATGCAACAGCACCTC CGAGTGAAGAGCGCAAGGTTGGAAGTGATGCTCTGGGTTACCAAGGTAGTAATGATGGGTTACCAAGGTAG
AA sequence Show only first row Show all	>Potri.014G012700.2 pacid=42764063 polypeptide=Potri.014G012700.2.p locus=Potri.014G012700 ID=Potri.014G012700.2.v4.1 annot-version=v4.1 MDVEERKLFVGGIPRGTSEDTLRDHFSKYGVVSHLLVAKDQITKLPRGFAFVVFSEAASAARALQDSHVICGRTVEVKKAIPKTEKHQEHRQRHPHGNQE TASNGSGMNSDNSTGNVNYYRTKKIFVGGLSSSLTDEQFRNYFEKFGRTVDAIVMQDSSNKPRSFGFVTFDSEESAAKVMRNSFHELNGKTVEVKKAVPK DRVNGDIGSCSSNGFADKGPEPENHPFYGSTHDPHYTPFLMYDGVRGYFYGMSFYGGVYPMVGFGRPVLGVSPMVPTIPFMPAAGPFPYNNACLYLAYMH DASSTWAMEVVGHNQIVEPGVNGEVDVVHDSNVHVPSNATTPPSEEGNVGSESFGLKGGDVDAVHDSNGHVVPGMNGEEVGGCNQVVEPGVNGEVDVVRD SNGHVPSNATAPESEEGKVGSGLKGGDMDAVPDNNGHVEPGVNGEVDAVHDSNGHVPSNATAPPSEEGKVGSDAFGLKGGDVDAVPDINGHFEPDVNGEE VGGYNQIVEPDVNGEVEAFGDSNGHVPSNATAPPSEERKVGSDALGYQGSNDGLPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G58470		XF41, ATRBP1	RNA-binding protein 1 (.1)		Potri.014G012700 [exp]	0	1
					Potri.012G066225 [exp]	3.16	0.9255
AT3G49940	AS2	LBD38	LOB domain-containing protein ...		Potri.009G089600 [exp]	5.91	0.8885
AT5G51030			NAD(P)-binding Rossmann-fold s...		Potri.015G108400 [exp]	6.70	0.9308
AT5G05800			unknown protein		Potri.001G243108 [exp]	9.79	0.9179
					Potri.017G119750 [exp]	11.31	0.8913
AT1G57790			F-box family protein (.1)		Potri.012G106750 [exp]	11.91	0.9313
AT3G23750			Leucine-rich repeat protein ki...		Potri.005G049200 [exp]	12.00	0.9094
AT4G31830			unknown protein		Potri.018G106300 [exp]	12.84	0.9114
					Potri.017G031450 [exp]	13.26	0.8366
AT5G52960			unknown protein		Potri.016G123100 [exp]	13.85	0.9291

Compare expression of checked genes

Potri.014G012700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.