Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22680 40 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G007000 [exp] 94 / 5e-25 ND / Potri.014G012900 [exp] 49 / 1e-07 ND / Potri.019G082866 [exp] 43 / 2e-05 AT1G71970 86 / 2e-20 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017920 [exp] 45 / 5e-06 AT1G71970 82 / 7e-19 unknown protein Lus10011724 [exp] 40 / 0.0002 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05097 [poplar] [flax] DUF688 Protein of unknown function (DUF688)
Representative CDS sequence Show only first row Show all	>Potri.014G013000.1 pacid=42764625 polypeptide=Potri.014G013000.1.p locus=Potri.014G013000 ID=Potri.014G013000.1.v4.1 annot-version=v4.1 ATGAGCATGAAGCAAAGCAAGATTCACTCAAAAGGAAACGTGCCCTTCTCATGGGAGAAAAAGCCCGGAGAGTCCAAGGTAACTAGCCATCACGACTATC TTAGTAGAGAAACATCCGTGGTAAAGCTACAACCCCCTCCATGTCCGGTTGAAAGTTCCAGGATTTCAACTCACGATATCATAATCCCTCTTCCTCCATG CACGTTCCAGGCTCCGGGTGCTCCTTTGAGAAGTTCTTCAAGAAGAGGCCTCAAGAAGGATATTGATGACGACCCATTCTTGGCAGCTTATAAAGAGTGC ACCAAGAAAGATAAGCCTGTTGGAAAAGATTTTGGGTCTGGACGGAGAAAAAGAGCAATATTTGACTTCTCATCATGCAAGCAATCGTGTAGTGTCCGTG ACGATAACTTGGTTAGGGTTTCTCAGGTTCCCTACGAGAGAGAGAAATGGCACCATTCGTGA
AA sequence Show only first row Show all	>Potri.014G013000.1 pacid=42764625 polypeptide=Potri.014G013000.1.p locus=Potri.014G013000 ID=Potri.014G013000.1.v4.1 annot-version=v4.1 MSMKQSKIHSKGNVPFSWEKKPGESKVTSHHDYLSRETSVVKLQPPPCPVESSRISTHDIIIPLPPCTFQAPGAPLRSSSRRGLKKDIDDDPFLAAYKEC TKKDKPVGKDFGSGRRKRAIFDFSSCKQSCSVRDDNLVRVSQVPYEREKWHHS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.014G013000 [exp]	0	1
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.003G099000 [exp]	1.00	0.9929
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.001G451100 [exp]	5.38	0.9749	Pt-RCOMT1.5
					Potri.010G218400 [exp]	6.63	0.9874
					Potri.014G012900 [exp]	9.05	0.9898
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Potri.001G225800 [exp]	9.32	0.9887
AT1G20560		AAE1	acyl activating enzyme 1 (.1.2...		Potri.007G059401 [exp]	10.24	0.9871
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.017G133951 [exp]	12.36	0.9787
AT3G09020			alpha 1,4-glycosyltransferase ...		Potri.016G114200 [exp]	16.97	0.9698
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.002G219600 [exp]	20.85	0.9582	PLIN-GEN.22
AT2G23570		ATMES19	ARABIDOPSIS THALIANA METHYL ES...		Potri.007G037401 [exp]	20.92	0.9573

Compare expression of checked genes

Potri.014G013000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.