Plant FIBer expression Database

Potri.014G013100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G44910 808 / 0 ATPRP40A pre-mRNA-processing protein 40A (.1.2)
AT3G19670 427 / 3e-133 ATPRP40B pre-mRNA-processing protein 40B (.1)
AT3G19840 68 / 2e-11 ATPRP40C pre-mRNA-processing protein 40C (.1)
AT4G16280 44 / 0.0006 FCA RNA binding;abscisic acid binding (.1.2.3.4)
AT2G41020 44 / 0.0006 WW domain-containing protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G085400
[exp]
763 / 0 AT1G44910 651 / 0.0 pre-mRNA-processing protein 40A (.1.2)
Potri.001G289800
[exp]
741 / 0 AT1G44910 667 / 0.0 pre-mRNA-processing protein 40A (.1.2)
Potri.010G170400
[exp]
65 / 2e-10 AT3G19840 631 / 0.0 pre-mRNA-processing protein 40C (.1)
Potri.002G115501
[exp]
56 / 9e-09 ND /
Potri.010G147900
[exp]
50 / 1e-05 AT4G16280 338 / 3e-107 RNA binding;abscisic acid binding (.1.2.3.4)
Potri.002G192900
[exp]
45 / 0.0002 AT2G47310 273 / 1e-85 flowering time control protein-related / FCA gamma-related (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018659
[exp]
838 / 0 AT1G44910 834 / 0.0 pre-mRNA-processing protein 40A (.1.2)
Lus10007723
[exp]
803 / 0 AT1G44910 828 / 0.0 pre-mRNA-processing protein 40A (.1.2)
Lus10006142
[exp]
650 / 0 AT3G19670 648 / 0.0 pre-mRNA-processing protein 40B (.1)
Lus10033770
[exp]
506 / 2e-163 AT1G44910 682 / 0.0 pre-mRNA-processing protein 40A (.1.2)
Lus10012908
[exp]
58 / 4e-08 AT3G19840 673 / 0.0 pre-mRNA-processing protein 40C (.1)
Lus10030562
[exp]
56 / 1e-07 AT3G19840 671 / 0.0 pre-mRNA-processing protein 40C (.1)
Lus10037787
[exp]
50 / 1e-05 AT4G16280 391 / 5e-127 RNA binding;abscisic acid binding (.1.2.3.4)
Lus10006305
[exp]
47 / 1e-05 AT4G16280 68 / 1e-13 RNA binding;abscisic acid binding (.1.2.3.4)
Lus10017070
[exp]
49 / 3e-05 AT4G16280 376 / 2e-121 RNA binding;abscisic acid binding (.1.2.3.4)
Lus10029574
[exp]
46 / 0.0002 AT4G16280 467 / 1e-155 RNA binding;abscisic acid binding (.1.2.3.4)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0584 FF PF01846 FF FF domain
Representative CDS sequence
>Potri.014G013100.2 pacid=42764141 polypeptide=Potri.014G013100.2.p locus=Potri.014G013100 ID=Potri.014G013100.2.v4.1 annot-version=v4.1
ATGGCCAGTAATCCTCAATCTTCTGGCGGACAGTTTCGACCAATGGTTCCGACACAGCAAGGGCAGCCATTCATTCAGGTGGCTTCCCAACAGTTTCGGC
CAGTTGGACAAGGCATGCCTTCTTCACATGTTGGGATGCCAGCTGCTCAAAGTCAGCACCTGCAGTTTTCTCAACCAATCCAGCAGTTACCGCCATGGCC
AAATCAGCCTGGGGCACCTTCGGCACAGGCTTTATCAATGCCTTATGGTCAACTAAACAGGCCTCTGACATCATCACAGCCCCAGCAAAATGCCCCTCCA
TTAAGTAATCATATGCATGTGGTTGGCACCTCTGGAGTTCCTAACTCCTCACCATATGCCTTTGCACCATCTTCTTTTGGCCTGACACAAAACAGTGCCA
GTGCATTGCCCCAGTTCCCACCAATGTCTCAAATGCATGCACATGTTGTACCTATGGGGGGACAGCCTTGGTTGTCCTCTGGAAGTCATGGTGCTTCACT
TGTTCCCCCAGTCCAGCCTACTGTTGTCCAGCCTTCTATATCTTCTTCCTCAGATTCAACAGTAGCTGTTTCTAGCAATAGTCAACAGTCTTTGAGTGAT
TGGCAGGAACATACAGCGTCTGATGGGAGGAGGTATTATTACAACAGGAGAACAAAACAATCTAGTTGGGATAAGCCCTTTGAATTGATGACGCCAATTG
AGAGGGCTGATGCATCGACTGTTTGGAAGGAATTCACAACTCAAGAGGGGAAGAAGTATTACTACAACAAGGTTACAAAGCAATCTAAGTGGTCAATTCC
TGAGGAATTGAAGATGGCTCGTGAACAGGCGCAACAAACAGTTGGCCAGGGGAATCAATCAGAAACCGACGCAGCTTCAAATGTCCCAACTGCTGTTGCT
GTTACCTCAAGCGAAACATCCACCACAGCTGTTTCAGTTAGCTCTAGCTCTGTGATGTTACCAGGGGTCTCTTCAAGCCCAATTTCAGTCACTGCTGTCG
CTAATCCACCCCCAGTGGTAGTTTCTGGATCACCAGCTCTTCCTGTTGCACATTCTACCACAGCTAGTGCTGTAGGTGTCCAACCCTCTGTGACTCCTTT
ACCCACTGCTGTTTCAGTAGGTACTGGAGCTCCTGCTGCAGCAGTTGATGCAAAGACAACATCACTGAGTAGCATTGATAATCTATTATCTCAAAGTGCT
GCAAATTCTGTAGATGGAGCATCTATGATGGATACTGCGGAATTCAATAAAGTATCAATGGATATGGGAAAAACTAACGCCAGTCCTTTGGAGGAGAAGA
CCCCAGATGAGGAACCTTTAGTATTCGCCAACAAGCTGGAGGCAAAAAATGCATTCAAAGCTCTTCTAGAATCCGCAAATGTCCAGTCTGACTGGACTTG
GGAGCAGACGATGAGAGAGATCATTAATGACAAAAGATATGCTGCTTTAAAAACTCTTGGTGAGCGAAAGCAAGCATTCAATGAGTACTTAGGTCAAAGG
AAAAAACTAGAAGCTGAGGAGAGGCGTGTAAGACAGAAAAAGGCTCGGGAAGAGTTTGCCAAGATGTTGGAAGAGTGTAAGGAATTGACTTCATCCATGA
AGTGGAGCAAAGCTATAAGTCTGTTTGAAAATGATGAACGATACAAAGCTCTTGAGAGAGCCAGAGACCGAGAGGATCTTTTTGACAGCTACATTGTGGA
CCTTGAGAGGAAGGAAAAGGAGAAGGCTGCTGAAGACCGTAGGAGGAATGTAGCAGAATATAGAAAATTTCTGGAGTCCTGTGATTTCATCAAGGCCAGC
AGCCAATGGCGGAAAATTCAAGATCGCTTAGAGGATGATGAGCGGTGCTTGTGTCTTGAAAAACTTGACCGTTTACTCATTTTCCAGGACTATATTCGTG
ACTTGGAGAAAGAGGAAGAGGAACAAAAGAAGATACAAAAGGAACAATTGAGACGGGCTGAAAGGAAAAATCGTGATGAATTTCGCAAATTGTTGGAAGA
ACATGTTGCTTCTGGCTCCCTTACAGCTAAAACTCACTGGCTTGACTACTGTTTGAAGGTTAAGGATTTGCCTCAATATCAGGCTGTTGCAACAAACACG
TCTGGCTCAAAGCCAAAAGATCTGTTTGAGGATGTTTCTGAAGAACTAGAGAAACAATATCATGATGATAAAACTCGAATAAAGGATGCAATGAAGCTGG
GCAAGATTACCATGGTGTCAACATGGACATTTGAAGACTTCAAGGGTGCTGTTGCTGATGATATTGGTTCTCCACCAATATCAGATATCAACCTAAAGCT
TTTATACGAGGAGCTAGTTGAAAGAGCCAAGGAGAAGGAGGAGAAAGAAGCTAAAAAACAGCAACGTCTTGCTGATGATTTCACTAAATTACTGTATACT
CTTAAGGAAGTAACTCCTTCTTCTAACTGGGAGGATTGCAAACCGCTTTTTGAGGAGAGCCAGGAATACAGGTCAATTGGGGAAGAGAGTTTGAGTAAGG
AAATTTTTGAAGAATATGTCACACACTTACAGGAAAAGGCCAAAGAGAAGGAACGCAAGCGTGAGGAAGAAAAGGCCAGGAAGGAGAAAGAGAGAGAGGA
AAAAGACAAGAGAAAAGAGAAGGAGAGGAAGGAGAAGGAGAAAGAGAAAGAGAAAGAACGTGAAAGGGAAAAAGGAAAGCAACGGACAAAAAAGAATGAA
ACAGATGGTGAAAATGTTGATGCAAGTGATGGTTATGGCCACAAGGATGACAAAAAGAGGGAAAAGGACAAAGATAGGAAACACCGGAAACGGCATCAAA
GTGCCATTGATGATGTAAATTCTGATAAGGATGAGAAAGAAGAGTCTAAAAAATCACGCAAGCATAGCAGTGACCGTAAAAAATCTAGAAAGCACACATA
CACACCTGAATCAGATGGTGAAAGCCAGCATAAAAGGCACAAGAGAGATCACCGTGATGGTTCCCGCAGAAATGGCAGTAATGAGGAGCTTGAAGATGGG
GAGCTTGGCGATGATGTGGAAATCCGCAAACAACATATGGCAGCGGAGATTGATATCTGA
AA sequence
>Potri.014G013100.2 pacid=42764141 polypeptide=Potri.014G013100.2.p locus=Potri.014G013100 ID=Potri.014G013100.2.v4.1 annot-version=v4.1
MASNPQSSGGQFRPMVPTQQGQPFIQVASQQFRPVGQGMPSSHVGMPAAQSQHLQFSQPIQQLPPWPNQPGAPSAQALSMPYGQLNRPLTSSQPQQNAPP
LSNHMHVVGTSGVPNSSPYAFAPSSFGLTQNSASALPQFPPMSQMHAHVVPMGGQPWLSSGSHGASLVPPVQPTVVQPSISSSSDSTVAVSSNSQQSLSD
WQEHTASDGRRYYYNRRTKQSSWDKPFELMTPIERADASTVWKEFTTQEGKKYYYNKVTKQSKWSIPEELKMAREQAQQTVGQGNQSETDAASNVPTAVA
VTSSETSTTAVSVSSSSVMLPGVSSSPISVTAVANPPPVVVSGSPALPVAHSTTASAVGVQPSVTPLPTAVSVGTGAPAAAVDAKTTSLSSIDNLLSQSA
ANSVDGASMMDTAEFNKVSMDMGKTNASPLEEKTPDEEPLVFANKLEAKNAFKALLESANVQSDWTWEQTMREIINDKRYAALKTLGERKQAFNEYLGQR
KKLEAEERRVRQKKAREEFAKMLEECKELTSSMKWSKAISLFENDERYKALERARDREDLFDSYIVDLERKEKEKAAEDRRRNVAEYRKFLESCDFIKAS
SQWRKIQDRLEDDERCLCLEKLDRLLIFQDYIRDLEKEEEEQKKIQKEQLRRAERKNRDEFRKLLEEHVASGSLTAKTHWLDYCLKVKDLPQYQAVATNT
SGSKPKDLFEDVSEELEKQYHDDKTRIKDAMKLGKITMVSTWTFEDFKGAVADDIGSPPISDINLKLLYEELVERAKEKEEKEAKKQQRLADDFTKLLYT
LKEVTPSSNWEDCKPLFEESQEYRSIGEESLSKEIFEEYVTHLQEKAKEKERKREEEKARKEKEREEKDKRKEKERKEKEKEKEKEREREKGKQRTKKNE
TDGENVDASDGYGHKDDKKREKDKDRKHRKRHQSAIDDVNSDKDEKEESKKSRKHSSDRKKSRKHTYTPESDGESQHKRHKRDHRDGSRRNGSNEELEDG
ELGDDVEIRKQHMAAEIDI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G44910 ATPRP40A pre-mRNA-processing protein 40... Potri.014G013100
[exp]
0 1
AT1G10320 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Potri.004G228600
[exp]
2.00 0.9144
AT5G16780 MDF, DOT2 MERISTEM-DEFECTIVE, DEFECTIVEL... Potri.001G082100
[exp]
2.64 0.9206
AT4G10600 RING/FYVE/PHD zinc finger supe... Potri.001G448900
[exp]
4.69 0.8766
AT2G35540 DNAJ heat shock N-terminal dom... Potri.003G097800
[exp]
5.65 0.8915
AT5G58040 FIP1[V], ATFIP1... homolog of yeast FIP1 [V], hom... Potri.018G110100
[exp]
6.32 0.8812
AT1G65440 GTB1 global transcription factor gr... Potri.006G031900
[exp]
6.48 0.8817
AT2G16485 nucleic acid binding;zinc ion ... Potri.004G161700
[exp]
6.92 0.8941
AT1G68720 ATTADA, TADA ARABIDOPSIS THALIANA TRNA ADEN... Potri.008G111100
[exp]
7.07 0.8469
AT1G80930 MIF4G domain-containing protei... Potri.016G121100
[exp]
8.06 0.8880
AT2G44710 RNA-binding (RRM/RBD/RNP motif... Potri.007G014100
[exp]
8.24 0.8617

Potri.014G013100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.